G162609


Basic Information

Item Value
gene id G162609
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 35234229 ~ 35234704 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU220275
AAGGAGGACATGAAGAAATGATCAAATCACGCTAGACCAAACGTTTGTGAAAGAggtaaaaaaggagagagaaagacgagAGAAACCGAAGAAAAAGTTGATAAAGAAGCCaatgataaaaagagagaaagaaagaaaaagtgagagaggttAAAAATATGGGAAAGGAGGACatgaataaatgataaaatcacGCTAGACCAAACGTTTGTGAAAGAggtaaagaaagaagagagaaagagggagagagagaccaaaGACAAAGTTGATAAAGAAGCCaatgataaaaaagaaagagagaaaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220275 True 305 lncRNA 0.35 2 35234229 35234704

Neighbor

gene id symbol gene type direction distance location
pepd pepd coding upstream 395202 34807506 ~ 34839027 (+)
LOC103044586 NA coding upstream 884349 34319213 ~ 34349880 (+)
mios mios,LOC107671474,LOC107592123,LOC107592481 coding upstream 919005 34300018 ~ 34315224 (+)
LOC103027681 NA coding upstream 1016426 34213886 ~ 34217803 (+)
LOC103028011 LOC108413592 coding upstream 1034457 34176108 ~ 34199772 (+)
kctd15 kctd15,LOC107668486,LOC107712586,LOC107594376,LOC106562374 coding downstream 315188 35549892 ~ 35603715 (+)
lsm14a NA coding downstream 551626 35786330 ~ 35803285 (+)
gpi gpi,gpib,LOC107659049,LOC107712583,LOC108431707 coding downstream 654250 35888954 ~ 35909612 (+)
nedd4 nedd4,LOC107735005,LOC106562216 coding downstream 761268 35995972 ~ 36064422 (+)
prtg prtg coding downstream 839102 36073806 ~ 36110407 (+)
G162604 NA non-coding upstream 36242 35197077 ~ 35197987 (+)
G162599 NA non-coding upstream 58319 35161381 ~ 35175910 (+)
G162597 NA non-coding upstream 140834 35091871 ~ 35093395 (+)
LOC111194737 NA non-coding upstream 280094 34945644 ~ 34954135 (+)
G162583 NA non-coding upstream 325121 34908737 ~ 34909108 (+)
G162617 NA non-coding downstream 83242 35317946 ~ 35319647 (+)
G162620 NA non-coding downstream 105523 35340227 ~ 35340935 (+)
G162635 NA non-coding downstream 206979 35441683 ~ 35446341 (+)
G162593 NA non-coding downstream 263330 35498034 ~ 35520791 (+)
G162746 NA non-coding downstream 593316 35828020 ~ 35828825 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 2514954 32714183 ~ 32719275 (+)
G162032 NA other upstream 2939200 32236316 ~ 32295029 (+)
G162017 NA other upstream 3086039 32068862 ~ 32148190 (+)
efhb NA other upstream 3628739 31584746 ~ 31605490 (+)
hmgn2 NA other upstream 4355902 30875038 ~ 30878327 (+)
ss18l2 ss18l2,kiaa0355 other downstream 573161 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 877338 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 897711 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 1519481 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 2052463 37287167 ~ 37352779 (+)

Expression


Co-expression Network