ss18l2 (ss18l2,kiaa0355)


Basic Information

Item Value
gene id ss18l2
gene name ss18l2,kiaa0355
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 35807865 ~ 35814793 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU220439
actttctggacctgggttatCCACCTCTACAGTGTTGTATCAGCAGGATAGTTATATCAGTGAGTAAACTCCTGAGGAAAAGACGGTCTGAGGAGAGGATCTAGGGTTATTtactgatctgagatcagaatAACGGGTGTAGAACAGGTTAATCTCTCCTGTAGGATCAGAGAGGAGCATGTCTGTGGTGTTTGTTCCGAAGAGACAGCGCGGGAAAGCTCAGATCAACCAGGAGACGATCCAGAGACTCCTGGATGAGAACGACCAGCTTGTGAGATGTATAGCTGAGTATATGCAGAAAGGCAGAGCCACAGAATGTGTTCAATACCAGCAGATCCTTCACAGAAACCTGGTTTATTTAGGGACTATAGCGGATGCCAGTCCAGATTTGCCCGATTCTGCAGTGAATTCTTGTGAAGATGTGGCAACAGCGACTCCAAACACAGAGGCTCCAGAAACTCCAGTTACTCCAGTTCAACCCAGCTGAGACCCAGCAGCTTAAAACGTTGTACTGTGTACAACATTGTGTATTTATTACTGTTCCTttgataataaaattaataaaaacttttcATCCCTTATTTTACCCTCTGACTTGATAAATGCCAGGCAGTGAGGAAACAGACAAATGCATGAAATAAACACAAGTCCATTTTTCTAatacgtttatttatttattttttttgcattgctgGTACACTTGGAAAGTTTCGGTTGCCAGCTCTAGTGAACAATAAGCAACATAAGCCAAGCAATCCCCCTTCATGTCATGGATCAGTGTAATGTCTTCTGTcgtattatttcattatttttgaaGCCACTAGTAAaccattttttagatttttgacacagctgaaaaatgctaacttAATGTTTACAGTCCAAGGTCTTTTTAAAAAGGCTGCAACAGTTTGGGCGAGAACACAGACAAAGCAACAACCCCTACGTTTTTGATTGTGCAAAGCACAGAACTATAAAAAGATATAGATTTATATACAGCAAACGATTCTCTGTAAACATGGTAAGTATGTTAGTTCTCAGAAAACATGGTCATATCATAAATACAGGCAACATTGGCATCCGcaaacatcacaaaaaaaaagttaacattCTGGGCTGTTTAAATGCAGCCCACAGCCATAGAAACTGAAGAAGAACGGgctccaaaaaataaaaacacaaacaaaaaaaacccaaacaccCCAAATCTTATAAGAAACGTTTTTAGTGTTTGTAATGGCGTATTTGGTAACCTTTTGTAGATAGAacgtagattttttttttttttgactctgtagaaaaagaaaaatgtgcttTTCACATCTTgggaaaaataatgttttacttaATATGCCTATATTATGTTAACATATATAGTAATGGTATAACgtaagaaaatacaaaaataagattaatactGTCAATATTTGTAcaagaaatatattgtatttcaaAGAAACGAAATatgttatgtttgtttttagtgttttagtgtagttctgaaatgaacagccaatccaaaaaaataaggaaaaataaaagtatgtaaaagtaaaaagtatgaATTTTGACAGTAGACTTTTCCCAAAGGGGGGCATTTCATAGTAGGGTATCTAGATACGTTCTTTAAAATGTCACTAGAACTCCCAGACTCTGTTATATCTTATATCAAGCACCATTCACCCTATGAACGCTTTGGTTGGAGAAAAGTAAAGAGAACAAAAATATGCAAGTGCTATATAATAAACATGGCACGTAGTTTACTGctaatgtttttaaactttttttgttttttttatttgttttaaactgTCAGATGTTGAAAAAGTAGTGTATTTCTTTTCAAATTACACATCTGCtatgattattatattttctgccGAGCCTGCTCAAAGCTTCTTCATAAAAAgaagtaaattatttatatatttatatatatatatatttatttatattttttttctgagtcATTTACAAGCTATGGAACAGTAGCTGGGAGCTGTAGTCTAAGTGATCTGACACGAGATTTGGCAGTTACAGCTTTTTCAACACAGTATAGTTCATGGGTGGCAGCCCGGCCCTTcgccatctctccatctcttcatctctccatctgcagctctctctctctctgtctgtctgtctgtctgtctcacatTGGTTAAACAGCCATGCAGGTCACCTAATCCACGGTCGAGGAACACGGTAGCAAGTCTCCTGCTTTTCGCAGCTGGAATTACAACTAAAGACCGATTCTAGGATTTCTCACacacacgaaaaaaaaaaaaaaaaaaaaagaattccttGGTTTTCCTCATTTTTCCAGAAGCGGAACATGGCAGGTGGAATTCTAGATCTGTGTTCGGTCAAGCTTTGGAGCAGAAGCTCAAGCAGCAGCATAGACTCGCATAGAGTCGCGAGCTGCTGGGAAGCATGAATCATGCACTAGAGAGAATGGCGCGAATGGCAGTCAGAACGATTCCGTCGAAGCCGGGGGGAAACTCGCGTCGTAACCGatacaaaaacaatatgatgataataataatagccaCAATGTTCAGTACAAATTTTCGCCTATAAAAACCACACTCGTCTAAAGAACTATCAAAATGTACAGGTTGGTAGTCAGACTAAAGGTCGAGAAGAACGTCTCGGCTACAGTTTTGTACTAGGCCCAAGAGCAGAACAGTGAGATGCTCACCCGACCTCAAGCGTTAGTCCTGTCTGACTTCCAGATCAGCGCAGAACCCTTCAGTCAGACAGACTAACTAACGCGGCTCCTTGGCAGATGGGGGTCGCTCCCTTGATCTATTTGCTCTGCAGCATCCCACATTTTACTTCTTTATGTCTTTTTTGTGTcgttttttgtctgtttttcttttgaaCAGCTGAACAGCTTTTAAACGCACCCTAGTGACACTAATCTGACACTGATTCCTGAACCTCGGCATTCCGACATGGCCAAAACAAGTGACAGAAGATCGGTTCACCCTTCATTGCTGTTCCAGGAGCAGCTTACACTATCTTCTAAAGCTCACACTCCCTAGTCTTTGCACTACTACAACACACTCTGTTACAAAATCCCTGCACCTAAAACAGCAACCAGAAGGCAGCTTGCGCTAGTACTAGTCCGGCTCAGTACTGGTGCAGGTACGAGGGCCGGTGTTCAGGTTTTAGTGGGAAGTTTTTGAAGCCTTTGCTGAGAGCTTTATGCTGGGAAgcttgttgctgctgctgctgttgttgctgctgctgctgctgctgctgctgggagaAAGGGAAGCCAGAGGAGAGGCCACTGGAAGGAGAGCAGTCGCTGGCCGTCGACCACACCGGAGACTGCAGTATTTGCATGGAGTCTCCCCATTGGCTGGAAGGGATGGTCATCTGATAGAGGGAAGAGCTGGGATTGGGCATCGTGTTCGAGTGGGAGGAGTGCTGCCACGGGGCCTTGGGAGGCCAGGTCTTAGTTTTGCT
>XM_007251858.2
TAAAAATCCATTCCAGGGTTTTTGTACCAACCGCCTAGACAGCTCAGCCGAGTAaaaaaccctggggtggatttttactttctggacctgggttatCCACCTCTACAGTGTTGTATCAGCAGGATAGTTATATCAGTGAGTAAACTCCTGAGGAAAAGACGGTCTGAGGAGAGGATCTAGGGTTATTtactgatctgagatcagaatAACGGGTGTAGAACAGGTTAATCTCTCCTGTAGGATCAGAGAGGAGCATGTCTGTGGTGTTTGTTCCGAAGAGACAGCGCGGGAAAGCTCAGATCAACCAGGAGACGATCCAGAGACTCCTGGATGAGAACGACCAGCTTGTGAGATGTATAGCTGAGTATATGCAGAAAGGCAGAGCCACAGAATGTGTTCAATACCAGCAGATCCTTCACAGAAACCTGGTTTATTTAGGGACTATAGCGGATGCCAGTCCAGATTTGCCCGATTCTGCAGTGAATTCTTGTGAAGATGTGGCAACAGCGACTCCAAACACAGAGGCTCCAGAAACTCCAGTTACTCCAGTTCAACCCAGCTGAGACCCAGCAGCTTAAAACGTTGTACTGTGTACAACATTGTGTATTTATTACTGTTCCTttgataataaaattaataaaaacttttcATCCCTTATTTTA

Function

symbol description
ss18l2 Predicted to enable transcription coactivator activity. Predicted to be involved in positive regulation of dendrite morphogenesis and positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human SS18L2 (SS18 like 2).

NR:

description
SS18-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220439 True 3477 lncRNA 0.41 4 35807941 35814793
XM_007251858.2 False 662 mRNA 0.44 4 35807865 35811902

Neighbor

gene id symbol gene type direction distance location
lsm14a NA coding upstream 4580 35786330 ~ 35803285 (+)
kctd15 kctd15,LOC107668486,LOC107712586,LOC107594376,LOC106562374 coding upstream 204150 35549892 ~ 35603715 (+)
chst8 chst8,LOC108264314,LOC107668469 coding upstream 295088 35067318 ~ 35512777 (+)
pepd pepd coding upstream 968838 34807506 ~ 34839027 (+)
LOC103044586 NA coding upstream 1457985 34319213 ~ 34349880 (+)
gpi gpi,gpib,LOC107659049,LOC107712583,LOC108431707 coding downstream 74161 35888954 ~ 35909612 (+)
nedd4 nedd4,LOC107735005,LOC106562216 coding downstream 181179 35995972 ~ 36064422 (+)
prtg prtg coding downstream 259013 36073806 ~ 36110407 (+)
dnaaf4 NA coding downstream 312346 36127139 ~ 36136740 (+)
LOC103046170 NA coding downstream 327295 36142088 ~ 36148102 (+)
G162593 NA non-coding upstream 287074 35498034 ~ 35520791 (+)
G162635 NA non-coding upstream 361524 35441683 ~ 35446341 (+)
G162620 NA non-coding upstream 466930 35340227 ~ 35340935 (+)
G162617 NA non-coding upstream 488218 35317946 ~ 35319647 (+)
G162610 NA non-coding upstream 572777 35234290 ~ 35235088 (+)
G162746 NA non-coding downstream 13227 35828020 ~ 35828825 (+)
G162829 NA non-coding downstream 306929 36121722 ~ 36123863 (+)
G162848 pigb non-coding downstream 365047 36179840 ~ 36181301 (+)
G162850 NA non-coding downstream 367967 36182760 ~ 36183548 (+)
LOC103046468 NA non-coding downstream 368926 36183719 ~ 36185659 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 3088590 32714183 ~ 32719275 (+)
G162032 NA other upstream 3512836 32236316 ~ 32295029 (+)
G162017 NA other upstream 3659675 32068862 ~ 32148190 (+)
efhb NA other upstream 4202375 31584746 ~ 31605490 (+)
dhdds dhdds,LOC106582847,LOC106605152 other upstream 4913359 30854558 ~ 30894506 (+)
pygo1 pygo1 other downstream 297249 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 317622 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 939392 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 1472374 37287167 ~ 37352779 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other downstream 1595199 37409992 ~ 37411969 (+)

Expression


Co-expression Network