G162746


Basic Information

Item Value
gene id G162746
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 35828020 ~ 35828825 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU220448
aaaaagctctgcgcgacagtaggtgagctccgcggtacagttaaaaagctctgcgcgacagtaggtgagctccgcggtacagttaaaaagctctgcgcgacagtaggtgagctccgcggtacagttaaaaagctctgcgcgacagtaggtgagctccgcggtacagttaaaaagctctgcgcgacagtaggtgagctccgcggtacagttaaaaagctctgcgcgacagtatgtgagctccgcggtacagttaaaaa
>TU220449
aaaaagctctgcgcgacagtaggtgagctccgcggtacagttaaaaagctccgcacgacagtaggtgagctccgcggtacagttaaaaagctctgcgcgacagtaggtgagctccgcggtacagttaaaaagctctgcgcgacagtaggtgagctccgtggtacagttaaaaagctctgcgcgacagtaggtgagctccgcggtacagttaaaaagctctgcgcgacagtatgtgagctccgcggtacagttaaaaa
>TU220450
aaaaagctctgcgcgacagtaggtgagctccgcggtacagttaaaaagctccgcacgacagtaggtgagctccgcggtacagttaaaaagctctgcgcgacagtaggtgagctccgcggtacagttaaaaagctctgcgcgacagtaggtgagctccgcggtacagttaaaaagctctgcgcgacagtaggtgagctccgtggtacagttaaaaagctctgcgcgacagtaggtgagctccgcggtacagttaaaaagctctgcgcgacagtatgtgagctccgcggtacagttaaaaa
>TU220453
aaaaagctctgcgcgacagtaggtgagctccgcggtacagttaaaaagctccgcacgacagtaggtgagctccgcggtacagttaaaaagctctgcgcgacagtaggtgagctccgcggtacagttaaaaagctctgcgcgacagtaggtgagctctgcggtacagttaaaaagctccgctcgacagtaggtgagctccgcggtacagttaaaaagctctgcgcgacagtaggtgagctccgcggtacagttaaaaagctctgcgcgacagtaggtgagctctgcggtacagttaaaaagctctgcgcgacagtacgtgagctccgcggtacagttaaaaagctctgcgcgacagtatgtgagctccgcggtacaattaaaaagctccgcacgacagtaggtgagctccgtggtacagttaaaaagctctgcgcgacagtaggtgagctccgcggtacagttaaaaagctctgcgcgacagtatgtgagctccgcggtacagttaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220448 False 257 lncRNA 0.53 4 35828020 35828825
TU220449 False 257 lncRNA 0.53 2 35828020 35828825
TU220450 False 299 lncRNA 0.53 3 35828020 35828825
TU220453 True 509 lncRNA 0.53 3 35828020 35828825

Neighbor

gene id symbol gene type direction distance location
lsm14a NA coding upstream 24735 35786330 ~ 35803285 (+)
kctd15 kctd15,LOC107668486,LOC107712586,LOC107594376,LOC106562374 coding upstream 224305 35549892 ~ 35603715 (+)
chst8 chst8,LOC108264314,LOC107668469 coding upstream 315243 35067318 ~ 35512777 (+)
pepd pepd coding upstream 988993 34807506 ~ 34839027 (+)
LOC103044586 NA coding upstream 1478140 34319213 ~ 34349880 (+)
gpi gpi,gpib,LOC107659049,LOC107712583,LOC108431707 coding downstream 60129 35888954 ~ 35909612 (+)
nedd4 nedd4,LOC107735005,LOC106562216 coding downstream 167147 35995972 ~ 36064422 (+)
prtg prtg coding downstream 244981 36073806 ~ 36110407 (+)
dnaaf4 NA coding downstream 298314 36127139 ~ 36136740 (+)
LOC103046170 NA coding downstream 313263 36142088 ~ 36148102 (+)
G162593 NA non-coding upstream 307229 35498034 ~ 35520791 (+)
G162635 NA non-coding upstream 381679 35441683 ~ 35446341 (+)
G162620 NA non-coding upstream 487085 35340227 ~ 35340935 (+)
G162617 NA non-coding upstream 508373 35317946 ~ 35319647 (+)
G162610 NA non-coding upstream 592932 35234290 ~ 35235088 (+)
G162829 NA non-coding downstream 292897 36121722 ~ 36123863 (+)
G162848 pigb non-coding downstream 351015 36179840 ~ 36181301 (+)
G162850 NA non-coding downstream 353935 36182760 ~ 36183548 (+)
LOC103046468 NA non-coding downstream 354894 36183719 ~ 36185659 (+)
G162870 NA non-coding downstream 399900 36228725 ~ 36229855 (+)
ss18l2 ss18l2,kiaa0355 other upstream 13227 35807865 ~ 35814793 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 3108745 32714183 ~ 32719275 (+)
G162032 NA other upstream 3532991 32236316 ~ 32295029 (+)
G162017 NA other upstream 3679830 32068862 ~ 32148190 (+)
efhb NA other upstream 4222530 31584746 ~ 31605490 (+)
pygo1 pygo1 other downstream 283217 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 303590 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 925360 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 1458342 37287167 ~ 37352779 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other downstream 1581167 37409992 ~ 37411969 (+)

Expression


Co-expression Network