G162829


Basic Information

Item Value
gene id G162829
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 36121722 ~ 36123863 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU220552
CCATCTTTCCACTTCAACTGCTTTCTGACTCCTAGGGCCTCACCCTCTATGCTGTTATTCCAGTGCACTCCTACTTGAATAGGCTGGCAGCACCTTGAAACACCCTAATGAATTAATTCCCTACCTTTCTTTCCTTTGACCTCCACACTGCTTTCCTCAAGCATCGGCTTATCCTCTGGCTTTCTCAAAGACTACAAGGTCGCACTTCCAACACTCAGTTGCTGGAGTTCCCAAGCCTTTCACAGTCAGACCTCTTCTTAAATCCTTGCAGCGGTCGAAAGTTCTGATTTAATTtttggggcttcggcttcacgctttacagcgaagctgccccgaactccaccccaatactctgagttcgctcccactcttttcttcttctctgcccagtcaagggcgtgggtcaatactagcaaaactGCCTTTTTTATCTCTAGTGTCTAATTCCAACAATTAGTTTTCCCTATGTTAATATTGgcacactttttattttcctgtaaaaatcaggaatattatttttctgtgatatctTAACAAGGCTTATACGCGTAGGAATTAAGTGATTGACTGTCTTAGGTGGAACAGACCCTCTGCATTACATGGCGTCCACTAAAACTAGATAGACAGAACTATATCTTAACAAAATTATCAATAAAACAGAATaccaggctaagcgctgccactataatctggagattgctggttcaaatcctagtcatgcagcttgccatttaGCCAGAGCCCTGAGCGAGCACAGAattacagaacagaacagaaggaAATAGAATCATGGCCTCCATGTTATCAACAGTGATGCATCTGAAAAAGAAGTGTAATTACATGTAGCATAAATACTCTGGTCCAGTAGTGCACACAGCACGGCCCAatgacattaataataataataagaagaagaagaagaataactGAACCTAATTATGTGCACTGAAATGCTCTTGaatcatttttgatatttaattgcATATCTTTACCAGGTCACTCTGTTCTCTGTACCTGGGATAACAAGGAATGcaccaaagttttttttttttttttttaccaaaacagtaaaaaaacaggaaatcagaatcagaacacagttttttttgtgtttgctttTCAAAGAAACAGTAGTcaaaacaattacaattaaaatatttaatgaacaTCCCATAGACTCAGTACAAATAttcttttccacatttttttttttttggccatttttGTTGAATAATTTCAGTTGCCATATATTTGGTGCATTCTTAGAGGCAAAGCTTTAAGgcagtttaagaaaaaaaatgtattatgttaTTGCACAGAATGTATTGGAGTAGTGTGATCAAATGTTTTGATCAATAAGTTGTATACATAAGCACCTATTCCCTTGAGTTGAAGATCATAAAAAATGTGCTGATCAGCTCTATTAAACCTTGAAGATTGAAGtttgtttttgcagtgtattatAAGAATGTACATGTATATTCCCCTATTGAGAAATACCGAAgattaactattttttatattggctACTGTTGATgtacaatataatacatatgaccttttaaattttatatggTTCTAATATTGTTTGGACTGTAAACAGTCTGAGTGTCAGCAGTTGGAGCAGTGTAGCATCATGAATGTAAAGTTCAAACATGATCTGTGTTATGCTCCGTTacaatttgtcttttatttGTGTACCAAGGAATCACAAACGCTcagataaatgtgtttttggtttCAGTTCAATCAGTACCATTCACAACTGCTCCACAAAAGATTTTCATTTGTGATTGAACCTATGAACAAAAACATGACCAAATCCAAGTATTCCTTAATGATTTGTGTTGTAAACATGTCAGATTTTTCTCAAGGGAAGTGAACTATTTTCCCTCttggttaaaaaaacaacaacaacaacaacaatgaaTGGAGTAAAAGGGTTTAGTAGTAGTCGGCTGTGTAAAGACTGTTTGACACCTGGTGCCTTAGCCATGCTTTGCTTGTATGAATGATGACAGATCAGGATCAGAAGGCACTGTGTGTGGTCACATGATCATTAGAGAACCATATTCAGCACCTGGTGCAACTGATTTGATTACAGGACACTGAATGTACAGCTTAAAATAAACCTGAATGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220552 True 2142 lncRNA 0.37 1 36121722 36123863

Neighbor

gene id symbol gene type direction distance location
prtg prtg coding upstream 11315 36073806 ~ 36110407 (+)
nedd4 nedd4,LOC107735005,LOC106562216 coding upstream 57300 35995972 ~ 36064422 (+)
gpi gpi,gpib,LOC107659049,LOC107712583,LOC108431707 coding upstream 212110 35888954 ~ 35909612 (+)
lsm14a NA coding upstream 318437 35786330 ~ 35803285 (+)
kctd15 kctd15,LOC107668486,LOC107712586,LOC107594376,LOC106562374 coding upstream 518007 35549892 ~ 35603715 (+)
dnaaf4 NA coding downstream 3276 36127139 ~ 36136740 (+)
LOC103046170 NA coding downstream 18225 36142088 ~ 36148102 (+)
rab27a rab27a,LOC107735066,LOC107600376,LOC107659079 coding downstream 64905 36188768 ~ 36223035 (+)
LOC111194719 NA coding downstream 267312 36391175 ~ 36439808 (+)
LOC103026877 unc13c,LOC108411445 coding downstream 846847 36970710 ~ 37261985 (+)
G162746 NA non-coding upstream 292897 35828020 ~ 35828825 (+)
G162593 NA non-coding upstream 600931 35498034 ~ 35520791 (+)
G162635 NA non-coding upstream 675381 35441683 ~ 35446341 (+)
G162620 NA non-coding upstream 780787 35340227 ~ 35340935 (+)
G162617 NA non-coding upstream 802075 35317946 ~ 35319647 (+)
G162848 pigb non-coding downstream 55977 36179840 ~ 36181301 (+)
G162850 NA non-coding downstream 58897 36182760 ~ 36183548 (+)
LOC103046468 NA non-coding downstream 59856 36183719 ~ 36185659 (+)
G162870 NA non-coding downstream 104862 36228725 ~ 36229855 (+)
G162883 NA non-coding downstream 109889 36233752 ~ 36234088 (+)
pygo1 pygo1 other upstream 1320 36112042 ~ 36120402 (+)
ss18l2 ss18l2,kiaa0355 other upstream 306929 35807865 ~ 35814793 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 3402447 32714183 ~ 32719275 (+)
G162032 NA other upstream 3826693 32236316 ~ 32295029 (+)
G162017 NA other upstream 3973532 32068862 ~ 32148190 (+)
ccpg1 ccpg1 other downstream 8552 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 630322 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 1163304 37287167 ~ 37352779 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other downstream 1286129 37409992 ~ 37411969 (+)
reln reln other downstream 3451226 39575089 ~ 39788454 (+)

Expression


Co-expression Network