pygo1 (pygo1)


Basic Information

Item Value
gene id pygo1
gene name pygo1
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 36112042 ~ 36120402 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU220553
CTTTGTCAGCTAATTTTCAGCTGAACTGAAGCTACTTACTCTGAACCTGAGGGTTTGCTCATCCTGGGGTTTTCTCTGTAGGGATGCTAGATGTCACTCTGCCAGTGTGAAAGTCAAAGTTATTTAGTTTCTTCTGGGCTCTGTTTCAGTACTCTGTGGGGAGAGCtcattttctcctgtttttatcTTTCCACCTTCCTCCACAGACCTTCTCTTTTCACTTGCTTTTACTGATCTGTAGAAAATGTCGATAATTAGccattttacacttttcttaATTTGACTGTAAGTTTCATGCACCAACTTGTTCTGTAAAATCTTAACCGGTTTTAAACTTGTGTATCCTAGCGATGGAGCGATCAGTGTTTTGGAGCCAATACTAATCACGGGTGGGGCTGGATGCCACTTTAACCAAGTAGACTTGTGAAGGAATCCTTGTGCAGGGCTTCTGCAATGTCCTGTTTATCGTTTGTTTTTAAGatgaactgtttttattttttttgctttttttggcaATCAGAGATATGAGGGATGAGGAAGTGTTTACTTGTTGatgctcactgtactgggctgggCTCTTGAGAGGGGAttccagttagtgttctgataattactgtactgggctgaaTGTTGTAGATTCTTTTTTGTGCTAAAAATAGTCTATAGTACTCTTATGTGCTTGTGTGAACCCACTTTCTGATTTTAATATAGTTTGTCTTCTCTGTCTCCTTCTGGATTCTTTATGGAGTTCTAAAGTTGATCTTCTGTTTCTGAAAAGGAACATATTCAGATATGTGTTACATCTTTGACTTGGCAGATTGGGTTACTGTTTATACTTGTTTAGTATCAAATATTTACATGAAGATGAAagattgtgtgtttttgctgtttagtTGAGTTCATGAAgtgtaacattaacattaaaatataactgGATGCCAGTTGATATTATAGTTGCCATCTATGTGTCAGCCTTTTCTTCAGGAGGTTGCATATTGGATTCCTGGTGATGCCACAtcaat
>XM_007251864.3
GCGGACCGCGCTGCCCGCCACGGCGCTCTGGAGCCCGGGGGAAACTTTCAGCACAGCGGGGTGGGCTGGTCTCCCCGTGCGGGAGAGTTTAATAGAGAGTTTATTCCAGCTGCTCCTCCTAAAGTATCGGAGAGGTTGAAGCtttccacacatacacacacacacacacacacactcactctctctcagagatagacacacacacactctttcagaCACACATATAGCAGTGATTGCTACTGAAGTGGAGAAGGTGGGGGGCTAGTTCAGCTCAGAGGAGTTGGGGCTGATTTTCTGTCTGTTCTGCTGGTTGGAGTCATGTGAGGTGAACTGTAATGTCCGTGGAGCAGGAAAAAGACTCGCTTTCGCTCAAAAGAAACCGAGGAGGAGACGGTGGTCTCGATGGTTTAGGTGGGCCAGGCCTGCTTCTGGGGAGCCCAGATAAGAAGAAACGCAAGTCCAGTACACAGGCTCCCTCCTTCGCACCGCTCTCTGAATATGCTCCTCCAGCTAACCCCAGCTCTGATCACTTGGTGGCTTCCAATCCTTTTGATGATAACTACAACTGTTCGCCTCCATCTCTAAAGGCACTCAACACCAACAATCCTTATTTTAGCCCTTCTCACTACCCAGGATTTGGTGGCTATGGCCCGCCACGGATGGCACCCCATATCCAGAACAGGATGCCCTCTCCTTTTGGGGGGCCATATCAGATCCGGAACCAGCCACCGCACCCATTTTCCCAGAACCCAATGAGCCCATTGGGTATGGGCTTTAACCGGCCGCCCAACTTTAGCTACGGCCACCCCGACGGTCCAGCCTTCGCCAATCAGCCTATATTTAACACTGGTGGCATTCACCTTCCAACTGGTCAGCCCTTTAGGCCAGGTCTTGGAGAGAACTTGAACCAGATGCCCCTTCCCAATGTGAACCAGAACCAGGGTGTTTCAGGTCGCTTGAGTCCTGGGTTTGGTCCGGAGGGACCTGGGAACTTGCCACCAACAGTGAAGCCAAACTCAGATTTGAGCCCAGGAATTTCTCAGCCATCTAGCCAACTAGCCAACTTTGGCCAACCCAGtacaccaacatctacacccaAACAGGGCCCAAATGAAAttgcaaacaacaaaaaatctgGTCTGAATGCCAGTTCGCCCCGAAAACAAAACCAGATTCCCGAGAATGGTGGTGCAAGTCAAGATACGCATGTGGAGCCCAAAGGAAAAAACAGGGGAAATGTCTCAGCTGGCCTTGAAGCAGGGGTGGAGAAGATTAACGGTGTGATCCATCCCAGCCCTGACCCCTTAAAGAAATCCCCACAGCCCACAGCTCATATCGAAACCCCAACAGAGAGGAACCGAAGGCCTGGGAGCGCCGGCCGTAGCGGCGGTGCTTTGTCCAATAAAAAGACTTCAGCTCATCCCAGCAGGCCCAACAactccagctcctcctctgaGCCTGTGTACCCATGCGGAATCTGCCTCAGTGAGGTGAACGATGACCAGGAGGCTATTTTGTGTGAGGCCTCCTGTCAAAAATGGTTCCACAGGGTGTGCACAGGGATGACGGAGACGGCCTATAACCTGCTGACGGCCGAGGTGGCCGCCGTGTGGGGCTGTGACAGCTGCATGGAGGAGAAAGGAGGACAGCTCCTCAAATCACGAGAGATACAAGGCCAGCCTACAGCAAACAGCGAGGGACAGTCCtgagttgtgtttttttgttggttgttttttttttaaagaattgccAATGCAGTCGTATCTACTGTAGATAAAGTCCTGCAGACTAAAGATGTGAAGACAGGCTGTGCTCAAGCCAAGGTTTCTTACAAGGTGCACCTTTACAAAGGATTTAGATTGTGTAGTTATCTAACCAGCACACTCAGAAACCATAATTTTACGTTATCTGGTGAGGTACTTATCGTCAGTCTAAGGTTACCTTCATGCAGTGGGTATATGTGGCCCATGTTCTGTCTTTTTTGGTCAAATATgaagtaaaaaacataaaatctgaCAATTTCAGTTCCTTTTCAGACCAATTTAAGCCATATATGAGGTTTTGAAATCCTGTACAAATCAATCACATGACAATGTGATACAATCTGGACATATAGATCAGTATTAAAGGAACTTTTTAGTCGGTCCAACTTGACAATGGTCATAATTGCACATTAATGAGAAGGGAAAATGGATGGGTAATGTGCAGCATTGCCCTTTTGCACAtgatcagtcagtcagtttaTGAGCGTGAACTGTTTGGATGAATGTCTGATATACAGTTGGTCACTTTAAATAGACAGTGTGAACAGACTTGCTGTGAAAACACTTTATCCAGTGTATAAATTTAGCCTTTGTTAAGGCTCTGTGCAagctgattgttcctttaaaatgAAAGCTTAAATGAAAGTTTAAGGTGACTGTTAGCTGCCTATCCTTTGAAcagaattaatgttttttttttaaactaatttatatGCCATTAAAATCAtgaacattattacaaataacacatatttttcaaaaaacaaACCTTCACTTAACATTAATGTTTTCACTTtgctacagaaaaaaacagctaacttatttttgcatgtttggCTTAGCTTAACCCAAAGCTGAGGCTTCTACTAAAATAATGTCTTCTTCCTCAAGGATCAGGAATAGGATTAGCTAATTTACTGAcatcaaattagattttttttttttaatatcaacgTTTTAGACTCCTGCTTACACAAAAAgattatttttgtgattttaaatgattaagcaATTAACaaaaagctagttagctatcttacacacacagaaaaatgaGTTTAACcatcttgaaaaaaaataacagcttaAGCTTTTTAAGCTTTTTCTGGTTTGTTACTGCTTTAGCTTGTAAGCCAGCATAtcacatacatttttatgtgtTATGCTGGTCATTGCTAACAATgatttttatgatttaattatGATTATACAATTTCAgcataatatttaatacagtttattttttcaagTAAATCATTTTActtgttattgtaatattagcTGTTTTTCCAACAGTTAGCTGGCTAACTTTGTCAGCTAATTTTCAGCTGAACTGAAGCTACTTACTCTGAACCTGAGGGTTTGCTCATCCTGGGGTTTTCTCTGTAGGGATGCTAGATGTCACTCTGCCAGTGTGAAAGTCAAAGTTATTTAGTTTCTTCTGGGCTCTGTTTCAGTACTCTGTGGGGAGAGCtcattttctcctgtttttatcTTTCCACCTTCCTCCACAGACCTTCTCTTTTCACTTGCTTTTACTGATCTGTAGAAAATGTCGATAATTAGccattttacacttttcttaATTTGACTGTAAGTTTCATGCACCAACTTGTTCTGTAAAATCTTAACCGGTTTTAAACTTGTGTATCCTAGCGATGGAGCGATCAGTGTTTTGGAGCCAATACTAATCACGGGTGGGGCTGGATGCCACTTTAACCAAGTAGACTTGTGAAGGAATCCTTGTGCAGGGCTTCTGCAATGTCCTGTTTATCGTTTGTTTTTAAGatgaactgtttttattttttttgctttttttggcaATCAGAGATATGAGGGATGAGGAAGTGTTTACTTGTTGatgctcactgtactggg

Function

symbol description
pygo1 Predicted to enable metal ion binding activity. Acts upstream of or within embryonic viscerocranium morphogenesis and regulation of canonical Wnt signaling pathway involved in heart development. Orthologous to human PYGO1 (pygopus family PHD finger 1).

NR:

description
PREDICTED: pygopus homolog 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220553 False 1022 lncRNA 0.38 1 36119381 36120402
XM_007251864.3 True 3641 mRNA 0.44 3 36112042 36119950

Neighbor

gene id symbol gene type direction distance location
prtg prtg coding upstream 1635 36073806 ~ 36110407 (+)
nedd4 nedd4,LOC107735005,LOC106562216 coding upstream 47620 35995972 ~ 36064422 (+)
gpi gpi,gpib,LOC107659049,LOC107712583,LOC108431707 coding upstream 202430 35888954 ~ 35909612 (+)
lsm14a NA coding upstream 308757 35786330 ~ 35803285 (+)
kctd15 kctd15,LOC107668486,LOC107712586,LOC107594376,LOC106562374 coding upstream 508327 35549892 ~ 35603715 (+)
dnaaf4 NA coding downstream 6737 36127139 ~ 36136740 (+)
LOC103046170 NA coding downstream 21686 36142088 ~ 36148102 (+)
rab27a rab27a,LOC107735066,LOC107600376,LOC107659079 coding downstream 68366 36188768 ~ 36223035 (+)
LOC111194719 NA coding downstream 270773 36391175 ~ 36439808 (+)
LOC103026877 unc13c,LOC108411445 coding downstream 850308 36970710 ~ 37261985 (+)
G162746 NA non-coding upstream 283217 35828020 ~ 35828825 (+)
G162593 NA non-coding upstream 591251 35498034 ~ 35520791 (+)
G162635 NA non-coding upstream 665701 35441683 ~ 35446341 (+)
G162620 NA non-coding upstream 771107 35340227 ~ 35340935 (+)
G162617 NA non-coding upstream 792395 35317946 ~ 35319647 (+)
G162829 NA non-coding downstream 1320 36121722 ~ 36123863 (+)
G162848 pigb non-coding downstream 59438 36179840 ~ 36181301 (+)
G162850 NA non-coding downstream 62358 36182760 ~ 36183548 (+)
LOC103046468 NA non-coding downstream 63317 36183719 ~ 36185659 (+)
G162870 NA non-coding downstream 108323 36228725 ~ 36229855 (+)
ss18l2 ss18l2,kiaa0355 other upstream 297249 35807865 ~ 35814793 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 3392767 32714183 ~ 32719275 (+)
G162032 NA other upstream 3817013 32236316 ~ 32295029 (+)
G162017 NA other upstream 3963852 32068862 ~ 32148190 (+)
efhb NA other upstream 4506552 31584746 ~ 31605490 (+)
ccpg1 ccpg1 other downstream 12013 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 633783 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 1166765 37287167 ~ 37352779 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other downstream 1289590 37409992 ~ 37411969 (+)
reln reln other downstream 3454687 39575089 ~ 39788454 (+)

Expression


Co-expression Network