G162848 (pigb)


Basic Information

Item Value
gene id G162848
gene name pigb
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 36179840 ~ 36181301 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU220583
CAGCTGAACCGTATCATAACTCAGCAGGTACAGTATCTTATATATTACAGAGAAGAGCAGTGGGTAGGAGTAACCGCGGATACCCTCTTTCCACTCCCAGGTTTCGTAGCCATACTTGAAGACCATACGATGGGAGACTTCAAGTGACTGCCAGAATTCATCTGGGACGAAACTGGTCTGGACCAGGAGGCAGTTAACAAGGCGAAagatcactgagatcactgttaCACTGAGCCCGAAGAAAC

Function

symbol description
pigb Predicted to enable alpha-1,2-mannosyltransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 80. Orthologous to human PIGB (phosphatidylinositol glycan anchor biosynthesis class B).

NR:

description
PREDICTED: GPI mannosyltransferase 3 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220583 True 245 lncRNA 0.48 2 36179840 36181301

Neighbor

gene id symbol gene type direction distance location
LOC103046170 NA coding upstream 31738 36142088 ~ 36148102 (+)
dnaaf4 NA coding upstream 43100 36127139 ~ 36136740 (+)
prtg prtg coding upstream 69433 36073806 ~ 36110407 (+)
nedd4 nedd4,LOC107735005,LOC106562216 coding upstream 115418 35995972 ~ 36064422 (+)
gpi gpi,gpib,LOC107659049,LOC107712583,LOC108431707 coding upstream 270228 35888954 ~ 35909612 (+)
rab27a rab27a,LOC107735066,LOC107600376,LOC107659079 coding downstream 7467 36188768 ~ 36223035 (+)
LOC111194719 NA coding downstream 209874 36391175 ~ 36439808 (+)
LOC103026877 unc13c,LOC108411445 coding downstream 789409 36970710 ~ 37261985 (+)
LOC103045417 NA coding downstream 1206193 37387494 ~ 37399839 (+)
LOC103045107 dhdh,LOC108431994,LOC107665090,LOC106587215 coding downstream 1220227 37401528 ~ 37407914 (+)
G162829 NA non-coding upstream 55977 36121722 ~ 36123863 (+)
G162746 NA non-coding upstream 351015 35828020 ~ 35828825 (+)
G162593 NA non-coding upstream 659049 35498034 ~ 35520791 (+)
G162635 NA non-coding upstream 733499 35441683 ~ 35446341 (+)
G162620 NA non-coding upstream 838905 35340227 ~ 35340935 (+)
G162850 NA non-coding downstream 1459 36182760 ~ 36183548 (+)
LOC103046468 NA non-coding downstream 2418 36183719 ~ 36185659 (+)
G162870 NA non-coding downstream 47424 36228725 ~ 36229855 (+)
G162883 NA non-coding downstream 52451 36233752 ~ 36234088 (+)
G162893 NA non-coding downstream 91823 36273124 ~ 36273362 (+)
ccpg1 ccpg1 other upstream 10095 36132415 ~ 36169745 (+)
pygo1 pygo1 other upstream 59438 36112042 ~ 36120402 (+)
ss18l2 ss18l2,kiaa0355 other upstream 365047 35807865 ~ 35814793 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 3460565 32714183 ~ 32719275 (+)
G162032 NA other upstream 3884811 32236316 ~ 32295029 (+)
G162964 LOC108431875,LOC108413582 other downstream 572884 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 1105866 37287167 ~ 37352779 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other downstream 1228691 37409992 ~ 37411969 (+)
reln reln other downstream 3393788 39575089 ~ 39788454 (+)

Expression


Co-expression Network