G162850


Basic Information

Item Value
gene id G162850
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 36182760 ~ 36183548 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU220585
TTGTGCTTGAATTAAAAATGAGTTAGGCGATTATTTTAGGAGGTGTCGATATGAAAAACATAGCCAGAGCCGGTTTATAGAAAGGGTGCCCACTTCCTATCTCCACCGGTATGTTAGAAaaaatactctgtgaagtatttaggtgctcttatctggagtgCTGTTAACTAGTGGATTCTGAGGCTGGcaactctgatgaatttatcctgtgcaacaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220585 True 218 lncRNA 0.40 2 36182760 36183548

Neighbor

gene id symbol gene type direction distance location
LOC103046170 NA coding upstream 34658 36142088 ~ 36148102 (+)
dnaaf4 NA coding upstream 46020 36127139 ~ 36136740 (+)
prtg prtg coding upstream 72353 36073806 ~ 36110407 (+)
nedd4 nedd4,LOC107735005,LOC106562216 coding upstream 118338 35995972 ~ 36064422 (+)
gpi gpi,gpib,LOC107659049,LOC107712583,LOC108431707 coding upstream 273148 35888954 ~ 35909612 (+)
rab27a rab27a,LOC107735066,LOC107600376,LOC107659079 coding downstream 5220 36188768 ~ 36223035 (+)
LOC111194719 NA coding downstream 207627 36391175 ~ 36439808 (+)
LOC103026877 unc13c,LOC108411445 coding downstream 787162 36970710 ~ 37261985 (+)
LOC103045417 NA coding downstream 1203946 37387494 ~ 37399839 (+)
LOC103045107 dhdh,LOC108431994,LOC107665090,LOC106587215 coding downstream 1217980 37401528 ~ 37407914 (+)
G162848 pigb non-coding upstream 1459 36179840 ~ 36181301 (+)
G162829 NA non-coding upstream 58897 36121722 ~ 36123863 (+)
G162746 NA non-coding upstream 353935 35828020 ~ 35828825 (+)
G162593 NA non-coding upstream 661969 35498034 ~ 35520791 (+)
G162635 NA non-coding upstream 736419 35441683 ~ 35446341 (+)
LOC103046468 NA non-coding downstream 171 36183719 ~ 36185659 (+)
G162870 NA non-coding downstream 45177 36228725 ~ 36229855 (+)
G162883 NA non-coding downstream 50204 36233752 ~ 36234088 (+)
G162893 NA non-coding downstream 89576 36273124 ~ 36273362 (+)
G162904 NA non-coding downstream 204473 36388021 ~ 36388392 (+)
ccpg1 ccpg1 other upstream 13015 36132415 ~ 36169745 (+)
pygo1 pygo1 other upstream 62358 36112042 ~ 36120402 (+)
ss18l2 ss18l2,kiaa0355 other upstream 367967 35807865 ~ 35814793 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 3463485 32714183 ~ 32719275 (+)
G162032 NA other upstream 3887731 32236316 ~ 32295029 (+)
G162964 LOC108431875,LOC108413582 other downstream 570637 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 1103619 37287167 ~ 37352779 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other downstream 1226444 37409992 ~ 37411969 (+)
reln reln other downstream 3391541 39575089 ~ 39788454 (+)

Expression


Co-expression Network