G162870


Basic Information

Item Value
gene id G162870
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 36228725 ~ 36229855 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU220619
atatatatatatatttataaacaataatatacaGAACAAAAGTTTAGTTTCTAAATAACGTTAGCTCACTTAGAGACCAAGACAGGACCAATTCCAAATGAAGTCAAGACCAAGAAGATACTGAGAACGAAGTCATACTACAACAGTAGTATCTGGATAAGACCGAGCCACATATAGTGTGCAGAACAGATGTAAAAGATGCAAAATCAAAATTGTGAATGCACAGACACATGCAGGACACATTCACATACCATAACTCCTCCAAACACAAGGCAGCATGGACTGCCTAAGCCATTGCCTTCCTTTGTGTGTGAAGTAATGCAGAATGGCACATGAATTGTGCACACCACACGAAGAAGCTGAACAGATAAACAACTTGTCACATATTCTGTCCCACACAACAGTTGTATTTCAGTCTAACAGGAGATGCATTTGATTActaagtgtaaatgcatgtggttaCATTTTTACCTgaatacaatccagatactagtcATGTGAAGTGACCAGATTTAAACAGAGTCTAATTCAACTCATTAGCTACCAATAGTTGCCTGCTAATGAAGTGTATGTGTTAAGGGAACATGAATAGCCCAAAATCATTCTACTCTCTGAAACTGAAAGTGCAGAACACTAACATATAATTTCATAGATTTCAGTTTAGGTAAACGGGCTGAGGTTGCCAATGAATGTTCATAGTGTTCAAAGTGCCAATAAGACAGAATGTGTAATGGTGTTTTTCCTGGAGGATTCTATGTCTTACATGCCAGATTTTAGGCTGTGCCACTGTTTTATAAAGgcattttctgaaaaaaaaaaaaaagaaaatgaacctGGTTGACTAACAGTCAAGCTACTACCTTTCCTACAACTGTCCAGAAGATCCAGAAGATCAATTCAATATCAATTTTAAGCCATTGACCAGTTGTTGTTCAAGTGCTCACAAGTACAGCATAAACAACTACCAGTCATTATCCACCAAGACTTTGGATACACAATCACTCATGAAGCATCTATCCTAATGTATAGTCTTTAACACTGAATCCACGCTAAACACTGTCTCTATgccaaatatgaaaaaaaaaatgtttcagaaaagaaatatattttattatttattaaaatggctTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220619 True 1131 lncRNA 0.36 1 36228725 36229855

Neighbor

gene id symbol gene type direction distance location
rab27a rab27a,LOC107735066,LOC107600376,LOC107659079 coding upstream 5690 36188768 ~ 36223035 (+)
LOC103046170 NA coding upstream 80623 36142088 ~ 36148102 (+)
dnaaf4 NA coding upstream 91985 36127139 ~ 36136740 (+)
prtg prtg coding upstream 118318 36073806 ~ 36110407 (+)
nedd4 nedd4,LOC107735005,LOC106562216 coding upstream 164303 35995972 ~ 36064422 (+)
LOC111194719 NA coding downstream 161320 36391175 ~ 36439808 (+)
LOC103026877 unc13c,LOC108411445 coding downstream 740855 36970710 ~ 37261985 (+)
LOC103045417 NA coding downstream 1157639 37387494 ~ 37399839 (+)
LOC103045107 dhdh,LOC108431994,LOC107665090,LOC106587215 coding downstream 1171673 37401528 ~ 37407914 (+)
parp6 parp6 coding downstream 1225880 37455735 ~ 37507197 (+)
LOC103046468 NA non-coding upstream 43066 36183719 ~ 36185659 (+)
G162850 NA non-coding upstream 45177 36182760 ~ 36183548 (+)
G162848 pigb non-coding upstream 47424 36179840 ~ 36181301 (+)
G162829 NA non-coding upstream 104862 36121722 ~ 36123863 (+)
G162746 NA non-coding upstream 399900 35828020 ~ 35828825 (+)
G162883 NA non-coding downstream 3897 36233752 ~ 36234088 (+)
G162893 NA non-coding downstream 43269 36273124 ~ 36273362 (+)
G162904 NA non-coding downstream 158166 36388021 ~ 36388392 (+)
G162917 NA non-coding downstream 257913 36487768 ~ 36487983 (+)
G162927 NA non-coding downstream 314615 36544470 ~ 36544753 (+)
ccpg1 ccpg1 other upstream 58980 36132415 ~ 36169745 (+)
pygo1 pygo1 other upstream 108323 36112042 ~ 36120402 (+)
ss18l2 ss18l2,kiaa0355 other upstream 413932 35807865 ~ 35814793 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 3509450 32714183 ~ 32719275 (+)
G162032 NA other upstream 3933696 32236316 ~ 32295029 (+)
G162964 LOC108431875,LOC108413582 other downstream 524330 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 1057312 37287167 ~ 37352779 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other downstream 1180137 37409992 ~ 37411969 (+)
reln reln other downstream 3345234 39575089 ~ 39788454 (+)

Expression


Co-expression Network