G162893


Basic Information

Item Value
gene id G162893
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 36273124 ~ 36273362 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU220657
tatagtgtcattgtgtaaatgtgtgtttaaatgcaATACTGCCATGCTGAAGTGCTGAATTGAGTGTGTAAATGAATGGGTGGATTATACGTGAATGCATGTTTGAGTGTTTAGTGTCTTAGTAAATGCGCACGTGTGTGTACATAAGTAAACGTGTAAATGTATGCACAGGATTATTGCATGTGTATGTGAAGGGGAGCTTTGTACAGTCATACAGTGGGGTACATACATGGAAGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220657 True 239 lncRNA 0.39 1 36273124 36273362

Neighbor

gene id symbol gene type direction distance location
rab27a rab27a,LOC107735066,LOC107600376,LOC107659079 coding upstream 50089 36188768 ~ 36223035 (+)
LOC103046170 NA coding upstream 125022 36142088 ~ 36148102 (+)
dnaaf4 NA coding upstream 136384 36127139 ~ 36136740 (+)
prtg prtg coding upstream 162717 36073806 ~ 36110407 (+)
nedd4 nedd4,LOC107735005,LOC106562216 coding upstream 208702 35995972 ~ 36064422 (+)
LOC111194719 NA coding downstream 117813 36391175 ~ 36439808 (+)
LOC103026877 unc13c,LOC108411445 coding downstream 697348 36970710 ~ 37261985 (+)
LOC103045417 NA coding downstream 1114132 37387494 ~ 37399839 (+)
LOC103045107 dhdh,LOC108431994,LOC107665090,LOC106587215 coding downstream 1128166 37401528 ~ 37407914 (+)
parp6 parp6 coding downstream 1182373 37455735 ~ 37507197 (+)
G162883 NA non-coding upstream 39036 36233752 ~ 36234088 (+)
G162870 NA non-coding upstream 43269 36228725 ~ 36229855 (+)
LOC103046468 NA non-coding upstream 87465 36183719 ~ 36185659 (+)
G162850 NA non-coding upstream 89576 36182760 ~ 36183548 (+)
G162848 pigb non-coding upstream 91823 36179840 ~ 36181301 (+)
G162904 NA non-coding downstream 114659 36388021 ~ 36388392 (+)
G162917 NA non-coding downstream 214406 36487768 ~ 36487983 (+)
G162927 NA non-coding downstream 271108 36544470 ~ 36544753 (+)
G162930 NA non-coding downstream 289227 36562589 ~ 36562903 (+)
G162941 NA non-coding downstream 396625 36669987 ~ 36671428 (+)
ccpg1 ccpg1 other upstream 103379 36132415 ~ 36169745 (+)
pygo1 pygo1 other upstream 152722 36112042 ~ 36120402 (+)
ss18l2 ss18l2,kiaa0355 other upstream 458331 35807865 ~ 35814793 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 3553849 32714183 ~ 32719275 (+)
G162032 NA other upstream 3978095 32236316 ~ 32295029 (+)
G162964 LOC108431875,LOC108413582 other downstream 480823 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 1013805 37287167 ~ 37352779 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other downstream 1136630 37409992 ~ 37411969 (+)
reln reln other downstream 3301727 39575089 ~ 39788454 (+)

Expression


Co-expression Network