G162944


Basic Information

Item Value
gene id G162944
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 36692461 ~ 36692696 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU220708
TATAGTTAACCTCTTAatacgccctggcccgccggcgggccagaaaaatatgatatttaatatctggctgtgtttatgaatagttataggttcaatatagacacccaatataccattttaaagcttagaatctctgcttttcagttatatagcctatttagctgtatctcctttcagaaaataaacatttagggcgaaatatgccttggttatgaaaatattaaatcataattttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220708 True 236 lncRNA 0.33 1 36692461 36692696

Neighbor

gene id symbol gene type direction distance location
LOC111194719 NA coding upstream 252653 36391175 ~ 36439808 (+)
rab27a rab27a,LOC107735066,LOC107600376,LOC107659079 coding upstream 469426 36188768 ~ 36223035 (+)
LOC103046170 NA coding upstream 544359 36142088 ~ 36148102 (+)
dnaaf4 NA coding upstream 555721 36127139 ~ 36136740 (+)
prtg prtg coding upstream 582054 36073806 ~ 36110407 (+)
LOC103026877 unc13c,LOC108411445 coding downstream 278014 36970710 ~ 37261985 (+)
LOC103045417 NA coding downstream 694798 37387494 ~ 37399839 (+)
LOC103045107 dhdh,LOC108431994,LOC107665090,LOC106587215 coding downstream 708832 37401528 ~ 37407914 (+)
parp6 parp6 coding downstream 763039 37455735 ~ 37507197 (+)
LOC111194820 celf6 coding downstream 897289 37589985 ~ 37835900 (+)
G162943 NA non-coding upstream 11685 36680529 ~ 36680776 (+)
G162942 NA non-coding upstream 20519 36670373 ~ 36671942 (+)
G162941 NA non-coding upstream 21033 36669987 ~ 36671428 (+)
G162930 NA non-coding upstream 129558 36562589 ~ 36562903 (+)
G162927 NA non-coding upstream 147708 36544470 ~ 36544753 (+)
G162946 NA non-coding downstream 1908 36694604 ~ 36694927 (+)
G162966 NA non-coding downstream 71610 36764306 ~ 36764572 (+)
G162973 NA non-coding downstream 83140 36775836 ~ 36776134 (+)
G162977 NA non-coding downstream 140678 36833374 ~ 36833797 (+)
G163004 NA non-coding downstream 180977 36873673 ~ 36874376 (+)
ccpg1 ccpg1 other upstream 522716 36132415 ~ 36169745 (+)
pygo1 pygo1 other upstream 572059 36112042 ~ 36120402 (+)
ss18l2 ss18l2,kiaa0355 other upstream 877668 35807865 ~ 35814793 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 3973186 32714183 ~ 32719275 (+)
G162032 NA other upstream 4397432 32236316 ~ 32295029 (+)
G162964 LOC108431875,LOC108413582 other downstream 61489 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 594471 37287167 ~ 37352779 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other downstream 717296 37409992 ~ 37411969 (+)
reln reln other downstream 2882393 39575089 ~ 39788454 (+)

Expression


Co-expression Network