G162964 (LOC108431875,LOC108413582)


Basic Information

Item Value
gene id G162964
gene name LOC108431875,LOC108413582
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 36754185 ~ 36754687 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU220729
CCCACTTGGAAAATCTGATCACAATCTGGTTTTCCTGAAGCCTCATTACAAACCCTGTGTGATGAGGCAACCAACCACAACACGCTCCTTCAGGAAGTGGTCTCAGGAGGCAGAGGAGACCCTGAAGGACTGCTTTGCATCCACAGACTGGAGTGTGCTTCAGGACTCTCACGGTGAGGACATTGAGGGGGTAGCAGACTGCACAACTGACTATCTGAACTTTTGCATGGACATTGTGGTTCCTGTAAGAACTGTTTGCTGCTTTGCCAACAACAAGCCCTGGATTACAAGCGACGTAAAGGACCtcttaaacaaaaagaagagggcCTTTAAAGACAAGAACCAGGAGGAGTTGAAGAATATTCAGCGTGAACTCAAGTCCTGCTTAAAGGAGGCTAAGGAGacctacaggaagaaggttgAGCAGAAGTTACAAGTTAACAACATGAAGGAAGTTTGGGACGGTATGAGGACAATCACAGGGTGCAAGCCAAAGAGTGATA

Function

NR:

description
PREDICTED: uncharacterized protein LOC108431875

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220729 True 503 TUCP 0.47 1 36754185 36754687

Neighbor

gene id symbol gene type direction distance location
LOC111194719 NA coding upstream 314377 36391175 ~ 36439808 (+)
rab27a rab27a,LOC107735066,LOC107600376,LOC107659079 coding upstream 531150 36188768 ~ 36223035 (+)
LOC103046170 NA coding upstream 606083 36142088 ~ 36148102 (+)
dnaaf4 NA coding upstream 617445 36127139 ~ 36136740 (+)
prtg prtg coding upstream 643778 36073806 ~ 36110407 (+)
LOC103026877 unc13c,LOC108411445 coding downstream 216023 36970710 ~ 37261985 (+)
LOC103045417 NA coding downstream 632807 37387494 ~ 37399839 (+)
LOC103045107 dhdh,LOC108431994,LOC107665090,LOC106587215 coding downstream 646841 37401528 ~ 37407914 (+)
parp6 parp6 coding downstream 701048 37455735 ~ 37507197 (+)
LOC111194820 celf6 coding downstream 835298 37589985 ~ 37835900 (+)
G162946 NA non-coding upstream 59258 36694604 ~ 36694927 (+)
G162944 NA non-coding upstream 61489 36692461 ~ 36692696 (+)
G162943 NA non-coding upstream 73409 36680529 ~ 36680776 (+)
G162942 NA non-coding upstream 82243 36670373 ~ 36671942 (+)
G162941 NA non-coding upstream 82757 36669987 ~ 36671428 (+)
G162966 NA non-coding downstream 9619 36764306 ~ 36764572 (+)
G162973 NA non-coding downstream 21149 36775836 ~ 36776134 (+)
G162977 NA non-coding downstream 78687 36833374 ~ 36833797 (+)
G163004 NA non-coding downstream 118986 36873673 ~ 36874376 (+)
G163009 NA non-coding downstream 145005 36899692 ~ 36899942 (+)
ccpg1 ccpg1 other upstream 584440 36132415 ~ 36169745 (+)
pygo1 pygo1 other upstream 633783 36112042 ~ 36120402 (+)
ss18l2 ss18l2,kiaa0355 other upstream 939392 35807865 ~ 35814793 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 4034910 32714183 ~ 32719275 (+)
G162032 NA other upstream 4459156 32236316 ~ 32295029 (+)
LOC103046025 hcn4,LOC108263998 other downstream 532480 37287167 ~ 37352779 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other downstream 655305 37409992 ~ 37411969 (+)
reln reln other downstream 2820402 39575089 ~ 39788454 (+)

Expression


Co-expression Network