G163004



Basic Information


Item Value
gene id G163004
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 36873673 ~ 36874376 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU220770
tccCTTGggtgtcctgatgagagccagtttcatcatgacgtttttttttatggtcttttgatgcaactgcacttaaggatactttcaaagatcTTCATTTTCCTTACTTAGTTGAGGAGTtttttgccataatctggattagaacattactcaaatagagctattcactgtatacctgtaactctacctcttcactactttacaactgatgctctcaaacacattaagaggcaagaaataaaaaatatttaactcttgacgagttcaacacagctgttaactgaaagcctgaatttcaggtgcctgagaaaatccaaccaagatgtgcaaaactgtcatctaaacaagatgtgctactttgaaaaatctaaaatataaaacatacactTTTTTGTGCACTTAATAATTCTGTGTGAATTTAacgtttgtccaaactttttactggtTTGGTACGTTTTTCAGGGCttattaatgtgttatgaaGCCCCTATGTAGGTAGCCttggactacgatacccagaattTACCACAGACTAACCTCACTCCCTCACATGATCACACGTCACTGTacacagcacctccaggaagtcaatcaccagaatattgaattCACCTGTCCACAcccatatacaggggttggacaatgaaactgaaacacctgtcattttagtgtgggaggtgtcatggctaaattggagcagcctg

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU220770 True 704 lncRNA 0.38 1 36873673 36874376
Loading

Neighbor


gene id symbol gene type direction distance location
LOC111194719 NA coding upstream 433865 36391175 ~ 36439808 (+)
rab27a rab27a,LOC107735066,LOC107600376,LOC107659079 coding upstream 650638 36188768 ~ 36223035 (+)
LOC103046170 NA coding upstream 725571 36142088 ~ 36148102 (+)
dnaaf4 NA coding upstream 736933 36127139 ~ 36136740 (+)
prtg prtg coding upstream 763266 36073806 ~ 36110407 (+)
LOC103026877 unc13c,LOC108411445 coding downstream 96334 36970710 ~ 37261985 (+)
LOC103045417 NA coding downstream 513118 37387494 ~ 37399839 (+)
LOC103045107 dhdh,LOC108431994,LOC107665090,LOC106587215 coding downstream 527152 37401528 ~ 37407914 (+)
parp6 parp6 coding downstream 581359 37455735 ~ 37507197 (+)
LOC111194820 celf6 coding downstream 715609 37589985 ~ 37835900 (+)
G162977 NA non-coding upstream 39876 36833374 ~ 36833797 (+)
G162973 NA non-coding upstream 97539 36775836 ~ 36776134 (+)
G162966 NA non-coding upstream 109101 36764306 ~ 36764572 (+)
G162946 NA non-coding upstream 178746 36694604 ~ 36694927 (+)
G162944 NA non-coding upstream 180977 36692461 ~ 36692696 (+)
G163009 NA non-coding downstream 25316 36899692 ~ 36899942 (+)
G163012 NA non-coding downstream 30273 36904649 ~ 36904848 (+)
G163020 NA non-coding downstream 41914 36916290 ~ 36916502 (+)
G163022 NA non-coding downstream 52149 36926525 ~ 36926814 (+)
G163028 NA non-coding downstream 70061 36944437 ~ 36952651 (+)
G162964 LOC108431875,LOC108413582 other upstream 118986 36754185 ~ 36754687 (+)
ccpg1 ccpg1 other upstream 703928 36132415 ~ 36169745 (+)
pygo1 pygo1 other upstream 753271 36112042 ~ 36120402 (+)
ss18l2 ss18l2,kiaa0355 other upstream 1058880 35807865 ~ 35814793 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 4154398 32714183 ~ 32719275 (+)
LOC103046025 hcn4,LOC108263998 other downstream 412791 37287167 ~ 37352779 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other downstream 535616 37409992 ~ 37411969 (+)
reln reln other downstream 2700713 39575089 ~ 39788454 (+)

Expression


G163004 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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G163004 Expression in each Bioproject

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G163004 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
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Co-expression Network