G163009


Basic Information

Item Value
gene id G163009
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 36899692 ~ 36899942 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU220775
tgtatttattaggggtgtcacgatctcgatattttatcgaaatcgaatcgaaatgaggtcacgatctcgagtatcgaagtcaaaaagaggatcgacgatccctcccgcgcgcgctacgcaaatagcgcagcgcgctacgcaaatggcgcggcaccaacacagcgcatcctattcatttaaatagagatagccactgcatgagcgcagtcggcgggagtgtgatcactgtttttatctgtccaacgggggag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220775 True 251 lncRNA 0.50 1 36899692 36899942

Neighbor

gene id symbol gene type direction distance location
LOC111194719 NA coding upstream 459884 36391175 ~ 36439808 (+)
rab27a rab27a,LOC107735066,LOC107600376,LOC107659079 coding upstream 676657 36188768 ~ 36223035 (+)
LOC103046170 NA coding upstream 751590 36142088 ~ 36148102 (+)
dnaaf4 NA coding upstream 762952 36127139 ~ 36136740 (+)
prtg prtg coding upstream 789285 36073806 ~ 36110407 (+)
LOC103026877 unc13c,LOC108411445 coding downstream 70768 36970710 ~ 37261985 (+)
LOC103045417 NA coding downstream 487552 37387494 ~ 37399839 (+)
LOC103045107 dhdh,LOC108431994,LOC107665090,LOC106587215 coding downstream 501586 37401528 ~ 37407914 (+)
parp6 parp6 coding downstream 555793 37455735 ~ 37507197 (+)
LOC111194820 celf6 coding downstream 690043 37589985 ~ 37835900 (+)
G163004 NA non-coding upstream 25316 36873673 ~ 36874376 (+)
G162977 NA non-coding upstream 65895 36833374 ~ 36833797 (+)
G162973 NA non-coding upstream 123558 36775836 ~ 36776134 (+)
G162966 NA non-coding upstream 135120 36764306 ~ 36764572 (+)
G162946 NA non-coding upstream 204765 36694604 ~ 36694927 (+)
G163012 NA non-coding downstream 4707 36904649 ~ 36904848 (+)
G163020 NA non-coding downstream 16348 36916290 ~ 36916502 (+)
G163022 NA non-coding downstream 26583 36926525 ~ 36926814 (+)
G163028 NA non-coding downstream 44495 36944437 ~ 36952651 (+)
G163030 NA non-coding downstream 53744 36953686 ~ 36954992 (+)
G162964 LOC108431875,LOC108413582 other upstream 145005 36754185 ~ 36754687 (+)
ccpg1 ccpg1 other upstream 729947 36132415 ~ 36169745 (+)
pygo1 pygo1 other upstream 779290 36112042 ~ 36120402 (+)
ss18l2 ss18l2,kiaa0355 other upstream 1084899 35807865 ~ 35814793 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 4180417 32714183 ~ 32719275 (+)
LOC103046025 hcn4,LOC108263998 other downstream 387225 37287167 ~ 37352779 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other downstream 510050 37409992 ~ 37411969 (+)
reln reln other downstream 2675147 39575089 ~ 39788454 (+)

Expression


Co-expression Network