CI01000012_11091957_11093675 (CCDC85A)


Basic Information

Item Value
gene id CI01000012_11091957_11093675
gene name CCDC85A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 11091957 ~ 11093774 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_11091957_11093675.mRNA
ATGGAAAAGCCCATCCAGCCTCAGCTGCAGTCGAGCATATCCAAGAGCGCAGAAGGTCCCTCAGAGGATCTCTCCAAACTTACGGATGAGGAGCTTCTGAAATGGAGCAAGGAGGAGCTGGTTCGCCGGCTGCGCAAAGCCGAAACCGAGAAGATGAGCGTTATAGTGGACCACAGCAATCTCATCCGAGAGGTGAACCGCAGGCTGCAGCAGCACCTCAACGAGATACGAGGACTGAAGGATGTGAATCAGAAGCTTCAAGAAGACAACCAGGAGCTGCGGGACCTTTGCTGCTTTCTGGATGACGACCGGCAAAAAGGAAAGAAGGTGTCGAGGGAGTGGCAGCGTTTGGGCCGCTACAGCGCAGGGATCATGCGTAAGGAGGTGACTCTGTACCTGCAGAAGCTGAAAGAGCTGGAGCAGAGGCAGGAGGAAGTAGTGAGGGAGAACCTTGAACTGAGAGAGCTGTGCCTTATGCTGGATGAGGAGAAGGGCTCTGGAGGCACTGGCAGGTCAGCAGGTACCGGGGGACCAGCCGGATGCAGGAATTCAATCGATAGCCAGAGCAGCCTGTCTCACGCCAGCGGTCCTGGGCCTGGCCTACTAAGGGATGTAGGTGACGGGAGCAGTACCTCCAGCGCGGGCAGCACCGACAGCCCTGACCATCTCACACATAAGCAGCAGCTGTTGGGTGGCCCGGTTGGAGGCAGTCCTGACCACCTACATAAGCCAGGCTCAGGGGAGGAGGCACCGGGTCCTGAGCATGCAAGCCGCAGACATAGCACCAGCCAGGAGTACACAGCACACACCTATCCCCAAGTGTGCCGGTCTCGCTGTGGGTCCTTCTCCAGTCCAGATCATAAGGGCCTACGGGGTCTCAGTCCAGAGAAACTTGGCAAGAGCCTGTCGAGAGGCAGTCCAGAGCAGTTCTCAAAACACTTGCTGGTGTCCTCTCAGCCACCTGGCAGCCCAGACCTTTTCCAGAAGCACAGGGCTAGCATGGGTAGTATGTGTGGGAGTCCAGAGCCCAAACAGATTCTATCAGGGACACCGGAGCACCTACAGAAGGGACGTGTCATATCTGGGAGCCCAGAGTTGTCGAGGCATCAACACAGCAAGTTTGGCAGCACTGGCCGAGAGGTGGCACAGAAGCGGCCGGGCGTAGAGGAGATGTCCCCTCATCACCGGAGCATCTATAGCGGTATGAATGGTGGGTCCGACTGGAGCCTGCTGTAGCACCCACAGAGAGATATGGAGTCCCATTTGAATGCACATGCAGAAGGGATGGTCATCCTTCATTCTGGAGCCAGCAAAGCCCCAATTCCCAGCCAGGCA

Function

symbol description
ccdc85a Predicted to be located in adherens junction. Orthologous to human CCDC85A (coiled-coil domain containing 85A).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_11091957_11093675.mRNA True 1335 mRNA 0.57 2 11091957 11093774

Neighbor

gene id symbol gene type direction distance location
CI01000012_11043669_11044569 NA coding upstream 47316 11043394 ~ 11044670 (+)
CI01000012_11011437_11013922 NA coding upstream 78026 11011364 ~ 11013931 (+)
CI01000012_10922409_10930704 DDX43 coding upstream 160672 10922409 ~ 10931285 (+)
CI01000012_10892631_10918617 KCNQ5 coding upstream 173340 10892631 ~ 10918617 (+)
CI01000012_10852509_10860759 NA coding upstream 231089 10849984 ~ 10860868 (+)
CI01000012_11277561_11292490 VRK2 coding downstream 183787 11277561 ~ 11292636 (+)
CI01000012_11319849_11326035 NA coding downstream 225286 11319060 ~ 11326904 (+)
CI01000012_11616967_11694276 NA coding downstream 521773 11615547 ~ 11694284 (+)
CI01000012_11698150_11702986 NA coding downstream 603341 11697115 ~ 11703213 (+)
CI01000012_11859839_11869022 PAPOLG coding downstream 765975 11859749 ~ 11870657 (+)
G75404 NA non-coding upstream 144471 10943450 ~ 10947486 (+)
G75398 NA non-coding upstream 149121 10938897 ~ 10942836 (+)
G75407 NA non-coding upstream 169616 10920216 ~ 10922341 (+)
G75477 NA non-coding upstream 295303 10796419 ~ 10796654 (+)
G75552 NA non-coding downstream 39594 11133368 ~ 11133689 (+)
G75554 NA non-coding downstream 41599 11135373 ~ 11135605 (+)
G75563 NA non-coding downstream 58285 11152059 ~ 11152384 (+)
G75566 NA non-coding downstream 60997 11154771 ~ 11155058 (+)
G75571 NA non-coding downstream 68454 11162228 ~ 11162545 (+)
CI01000012_10223957_10235955 NA other upstream 867670 10223697 ~ 10236276 (+)
G73578 NA other upstream 2724330 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 3284102 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 5167652 5922385 ~ 5929186 (+)
G71623 NA other upstream 5275352 5813517 ~ 5816605 (+)
G75533 NA other downstream 51043 11144817 ~ 11145739 (+)
G76385 NA other downstream 1536981 12630755 ~ 12675666 (+)
G76374 NA other downstream 1651757 12745531 ~ 12749169 (+)
CI01000012_13029637_13033226 RGS17 other downstream 1921732 13029435 ~ 13038899 (+)
G76645 NA other downstream 2558085 13651859 ~ 13652234 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006648 ccdc85a coding NC_007124.7 CM002897.2 27000394 ~ 27038407 (-)