G163110


Basic Information

Item Value
gene id G163110
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 37437568 ~ 37438049 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU220944
ttcggtcctctccacatttctagttaaactgagtcacaagctgtaatttttttattttaaaaggtttaatctgtgtgttttatttcggagacgagtatttttatgcagctatcagaaaaatctcatcacagtttacatgattagccaaccgttacctttcttttagaaaaatcgctgtatatccagatctgttttaacatcagctgctccgactagctgcctgaactcacagcgacggggggcttccccacactgaccctcctttgcaagctgattggctgtttctcctgaaaggcgggactttctccttgaaccggctccacgattggttaagagacacagagcggtcagtgccctgtctcctcaataatatatatatatttattgtaatataatacgggaaatttacgggtaAATACTAAtgcgggaggacggcgggaaagaggagtaaaatacggtagtttcccggccaaaacgggaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220944 True 482 lncRNA 0.43 1 37437568 37438049

Neighbor

gene id symbol gene type direction distance location
LOC103045107 dhdh,LOC108431994,LOC107665090,LOC106587215 coding upstream 29654 37401528 ~ 37407914 (+)
LOC103045417 NA coding upstream 37729 37387494 ~ 37399839 (+)
LOC103026877 unc13c,LOC108411445 coding upstream 175583 36970710 ~ 37261985 (+)
LOC111194719 NA coding upstream 997760 36391175 ~ 36439808 (+)
rab27a rab27a,LOC107735066,LOC107600376,LOC107659079 coding upstream 1214533 36188768 ~ 36223035 (+)
parp6 parp6 coding downstream 17686 37455735 ~ 37507197 (+)
LOC111194820 celf6 coding downstream 151936 37589985 ~ 37835900 (+)
LOC103021700 LOC103021700,LOC102310173,LOC102785042,LOC102211940,LOC101470544 coding downstream 506152 37944201 ~ 37946249 (+)
LOC111194723 LOC107704663 coding downstream 1506353 38944402 ~ 38945904 (+)
LOC111194822 LOC107569781 coding downstream 1508127 38946176 ~ 38951124 (+)
G163095 NA non-coding upstream 63363 37374006 ~ 37374205 (+)
G163087 NA non-coding upstream 65720 37366118 ~ 37371848 (+)
G163071 NA non-coding upstream 136446 37300767 ~ 37301122 (+)
G163049 NA non-coding upstream 186230 37250743 ~ 37251338 (+)
G163045 NA non-coding upstream 345986 37090108 ~ 37091582 (+)
G163161 NA non-coding downstream 109988 37548037 ~ 37548293 (+)
G163241 cox5ab,LOC107595344,LOC107713225,LOC103046663,LOC108432642,LOC107665137 non-coding downstream 526281 37964330 ~ 37977105 (+)
G163247 NA non-coding downstream 547009 37985058 ~ 37987068 (+)
G163288 NA non-coding downstream 1233233 38671282 ~ 38672233 (+)
G163296 NA non-coding downstream 1299670 38737719 ~ 38740775 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other upstream 25599 37409992 ~ 37411969 (+)
LOC103046025 hcn4,LOC108263998 other upstream 84789 37287167 ~ 37352779 (+)
G162964 LOC108431875,LOC108413582 other upstream 682881 36754185 ~ 36754687 (+)
ccpg1 ccpg1 other upstream 1267823 36132415 ~ 36169745 (+)
pygo1 pygo1 other upstream 1317166 36112042 ~ 36120402 (+)
reln reln other downstream 2137040 39575089 ~ 39788454 (+)

Expression


Co-expression Network