G163241 (cox5ab,LOC107595344,LOC107713225,LOC103046663,LOC108432642,LOC107665137)


Basic Information

Item Value
gene id G163241
gene name cox5ab,LOC107595344,LOC107713225,LOC103046663,LOC108432642,LOC107665137
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 37964330 ~ 37977105 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU221094
ATCAGATATTGCTCTGTTTATTAGGTCCATAACTGTATACATGACAGGACAGTACAGGGCTTTATGAACATCAGACAGTAAAGAACAAAGGCAGAGATGTAAGTGCTTTCAAAAACACCCTCGTCAGAGATGCCGGGAATTATTTCCAGAACGAGGACGTTTATGCCTTAGAGATTCCCAGCTCCTCTGGAGTGGAGATACCCAGCTCTGATAGGGTGGGGCGAAGCTCCTGGATCAGGTAGGGGTAGATCTCTTTATGAGGTCCTGATTTGTCCTTAACTGCCTCTAGAATGCGGATTGCGCTGGCCAAGTCATTCAACCTTCTGCATGCTCTCAGAGCAGAGTCCAGAATCTTGGGCTCAGGAACCAGGTCATACCCAATCAGAGTGTTCATGCCTTTCCTCAGCTCCCAGGCATCAAGGTCAGGCTTGCTGAAGTAAGTCACCCAGCGAGCATCAAACTCTTCATCTGTCTCTACTTTAGCGTGGGAGTAGCACCGAGTAGCTGCCAGAGCTGGAATAAAGAAAAGCACAGGAATATATTAAtaatcatcagcagcagcagaacacgGGGTTTTGTAAACACAGtaataacagcagcagcagagcaggaGGCCCGGGGATCAGGGTTTAACCGGAGAACTGAGTTCAGCGCGCCGGGTCATCACAAGGGCATGCGGGGGTTATAGCGGCTCAGCTAACAGACCGGCTAGCCGCCGCGCTGCGCGGTAAACAGCGGGTTAATCAGCGGATCCGAGACCCTGCAGGACCCGGGCGGGCGGATCAACAGCAGCGGCGGTTCTAACCCGGTTAAACCGGAGACCCGTGTGGACCGGGGCCGGACTCAGCGCCCGGCTACGGCTCTCCTTCAGCCGCCAGCGCGCGCGCTTTAGCTACCCGCTAACAGCAGCCCGACCCCGGGCAGAGCCTCAAACCCGCCCCCAGGTAAAAACCCCGACCCCCGGGCTGAGAGCGAACCTGAATGGGGAGAGCGGAGCCGCGCTAAACTCCGGACACCGGCGGCGGAGAGGCGGAGAGCGGCGGGCAGCATGTTGCCGGAGCGGGAGGTGAATACGGATCTGCAGAAGTCCGAGTCCGGAGAGAACCGCGGCCGGGAGCTCGGTTCACTAAATCAAATTCTGCTGTTCAGAAGAGTCGGTTCCTCGGAACGGACTCGAGACCTACTCGGATCAGTAAAGGACAGCGCCGGGGAGACGCACAGTGATGACGACAGTGTGCGCGTGGGGAAAGCAGGAAGTTAAAGCTACAGtatc

Function

symbol description
cox5ab Enables cytochrome-c oxidase activity. Acts upstream of or within embryonic organ development and spinal cord motor neuron differentiation. Predicted to be located in mitochondrial inner membrane. Predicted to be part of mitochondrial respiratory chain complex IV. Is expressed in brain; gill; heart; liver; and skeletal muscle. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Orthologous to human COX5A (cytochrome c oxidase subunit 5A).

NR:

description
Cox5ab protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU221094 True 1273 lncRNA 0.56 5 37964330 37977105

Neighbor

gene id symbol gene type direction distance location
LOC103021700 LOC103021700,LOC102310173,LOC102785042,LOC102211940,LOC101470544 coding upstream 18081 37944201 ~ 37946249 (+)
LOC111194820 celf6 coding upstream 128430 37589985 ~ 37835900 (+)
parp6 parp6 coding upstream 457133 37455735 ~ 37507197 (+)
LOC103045107 dhdh,LOC108431994,LOC107665090,LOC106587215 coding upstream 556416 37401528 ~ 37407914 (+)
LOC103045417 NA coding upstream 564491 37387494 ~ 37399839 (+)
LOC111194723 LOC107704663 coding downstream 967297 38944402 ~ 38945904 (+)
LOC111194822 LOC107569781 coding downstream 969071 38946176 ~ 38951124 (+)
LOC111194738 LOC104947953,LOC106536897 coding downstream 1115374 39092479 ~ 39094807 (+)
LOC103046335 ch25hl1.2,LOC108435345,LOC107691130,LOC107725743,LOC107567893,LOC102790067 coding downstream 1196219 39173324 ~ 39175138 (+)
tspan3 tspan3,tspan3a,LOC107690355 coding downstream 1208117 39185222 ~ 39191405 (+)
G163161 NA non-coding upstream 416037 37548037 ~ 37548293 (+)
G163110 NA non-coding upstream 526281 37437568 ~ 37438049 (+)
G163095 NA non-coding upstream 590125 37374006 ~ 37374205 (+)
G163087 NA non-coding upstream 592482 37366118 ~ 37371848 (+)
G163071 NA non-coding upstream 663208 37300767 ~ 37301122 (+)
G163247 NA non-coding downstream 7953 37985058 ~ 37987068 (+)
G163288 NA non-coding downstream 694177 38671282 ~ 38672233 (+)
G163296 NA non-coding downstream 760614 38737719 ~ 38740775 (+)
G163297 NA non-coding downstream 765690 38742795 ~ 38744936 (+)
G163349 NA non-coding downstream 825863 38802968 ~ 38803188 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other upstream 552361 37409992 ~ 37411969 (+)
LOC103046025 hcn4,LOC108263998 other upstream 611551 37287167 ~ 37352779 (+)
G162964 LOC108431875,LOC108413582 other upstream 1209643 36754185 ~ 36754687 (+)
ccpg1 ccpg1 other upstream 1794585 36132415 ~ 36169745 (+)
pygo1 pygo1 other upstream 1843928 36112042 ~ 36120402 (+)
reln reln other downstream 1597984 39575089 ~ 39788454 (+)

Expression


Co-expression Network