G163379


Basic Information

Item Value
gene id G163379
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 38873408 ~ 38873855 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU221291
CAAAGCCAGgaaaacaaccaaccaaaacatcagagccgaatcacaaaccgaaaacgaaaccataaaccagaagcagagttcaaataaccagaaaatcacaatacaaacagaacaaaaggatAAGGCAAAAACGTAGTCGAAAAGAACAAGAAAGGGTCATACACGGGTAATATAGACAGGAAAATAACGCTCAGTATATCGCTGGTGAACAGGGAAAATACCTCGCAACAcgcgagacaaacagacaggtatttatacctaaactaaattactaacacctgaacacagtctAGAATTCCGGTGACGTAGACCGCACGAATGAGCCGCGGTTGGCTGAGTCCGAACACGTGGTGTtgtcaggtgcatgctgggaggtgtagttccggaccggggattgtccatagacgggaacggcagagtcagaaaaaggaactacagagtctgtggt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU221291 True 448 lncRNA 0.45 1 38873408 38873855

Neighbor

gene id symbol gene type direction distance location
LOC103021700 LOC103021700,LOC102310173,LOC102785042,LOC102211940,LOC101470544 coding upstream 927159 37944201 ~ 37946249 (+)
LOC111194820 celf6 coding upstream 1037508 37589985 ~ 37835900 (+)
parp6 parp6 coding upstream 1366211 37455735 ~ 37507197 (+)
LOC103045107 dhdh,LOC108431994,LOC107665090,LOC106587215 coding upstream 1465494 37401528 ~ 37407914 (+)
LOC103045417 NA coding upstream 1473569 37387494 ~ 37399839 (+)
LOC111194723 LOC107704663 coding downstream 70547 38944402 ~ 38945904 (+)
LOC111194822 LOC107569781 coding downstream 72321 38946176 ~ 38951124 (+)
LOC111194738 LOC104947953,LOC106536897 coding downstream 218624 39092479 ~ 39094807 (+)
LOC103046335 ch25hl1.2,LOC108435345,LOC107691130,LOC107725743,LOC107567893,LOC102790067 coding downstream 299469 39173324 ~ 39175138 (+)
tspan3 tspan3,tspan3a,LOC107690355 coding downstream 311367 39185222 ~ 39191405 (+)
G163349 NA non-coding upstream 70220 38802968 ~ 38803188 (+)
G163297 NA non-coding upstream 128472 38742795 ~ 38744936 (+)
G163296 NA non-coding upstream 132633 38737719 ~ 38740775 (+)
G163288 NA non-coding upstream 201175 38671282 ~ 38672233 (+)
G163247 NA non-coding upstream 886340 37985058 ~ 37987068 (+)
G163382 NA non-coding downstream 6534 38880389 ~ 38880928 (+)
G163386 NA non-coding downstream 44084 38917939 ~ 38919688 (+)
G163420 NA non-coding downstream 163015 39036870 ~ 39042425 (+)
G163421 NA non-coding downstream 179539 39053394 ~ 39091133 (+)
G163443 NA non-coding downstream 231950 39105805 ~ 39106049 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other upstream 1461439 37409992 ~ 37411969 (+)
LOC103046025 hcn4,LOC108263998 other upstream 1520629 37287167 ~ 37352779 (+)
G162964 LOC108431875,LOC108413582 other upstream 2118721 36754185 ~ 36754687 (+)
ccpg1 ccpg1 other upstream 2703663 36132415 ~ 36169745 (+)
pygo1 pygo1 other upstream 2753006 36112042 ~ 36120402 (+)
reln reln other downstream 701234 39575089 ~ 39788454 (+)

Expression


Co-expression Network