G163420


Basic Information

Item Value
gene id G163420
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 39036870 ~ 39042425 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU221338
CAGGCCTAAACCTGTTACGGGAGAGAGCAAACAGAGGATGAGCGAACTTAATGAACTGCTCATATGAGGCCAAGTGTGCTTTAGTATATGAAATGTACACATTTGCTCTTCAATATCCTAAAATTAGGCCCCACATTCCCCCCTTCCGTGGGATTTAGTCCCACGGAACAATGATGAGATAATTTGGTATCTCAGGCTAGTTTCCAGAGCATAAAGATTTTTAGTGtagttatattatatatgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU221338 True 244 lncRNA 0.40 2 39036870 39042425

Neighbor

gene id symbol gene type direction distance location
LOC111194822 LOC107569781 coding upstream 85746 38946176 ~ 38951124 (+)
LOC111194723 LOC107704663 coding upstream 90966 38944402 ~ 38945904 (+)
LOC103021700 LOC103021700,LOC102310173,LOC102785042,LOC102211940,LOC101470544 coding upstream 1090621 37944201 ~ 37946249 (+)
LOC111194820 celf6 coding upstream 1200970 37589985 ~ 37835900 (+)
parp6 parp6 coding upstream 1529673 37455735 ~ 37507197 (+)
LOC111194738 LOC104947953,LOC106536897 coding downstream 50054 39092479 ~ 39094807 (+)
LOC103046335 ch25hl1.2,LOC108435345,LOC107691130,LOC107725743,LOC107567893,LOC102790067 coding downstream 130899 39173324 ~ 39175138 (+)
tspan3 tspan3,tspan3a,LOC107690355 coding downstream 142797 39185222 ~ 39191405 (+)
pik3c2a pik3c2a coding downstream 229511 39271936 ~ 39337878 (+)
LOC103038446 LOC108443054,LOC108263931,LOC108265089 coding downstream 445341 39487766 ~ 39492076 (+)
G163386 NA non-coding upstream 117182 38917939 ~ 38919688 (+)
G163382 NA non-coding upstream 155942 38880389 ~ 38880928 (+)
G163379 NA non-coding upstream 163015 38873408 ~ 38873855 (+)
G163349 NA non-coding upstream 233682 38802968 ~ 38803188 (+)
G163297 NA non-coding upstream 291934 38742795 ~ 38744936 (+)
G163421 NA non-coding downstream 10969 39053394 ~ 39091133 (+)
G163443 NA non-coding downstream 63380 39105805 ~ 39106049 (+)
G163444 NA non-coding downstream 65362 39107787 ~ 39129586 (+)
G163465 NA non-coding downstream 133775 39176200 ~ 39178877 (+)
G163474 NA non-coding downstream 159908 39202333 ~ 39221652 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other upstream 1624901 37409992 ~ 37411969 (+)
LOC103046025 hcn4,LOC108263998 other upstream 1684091 37287167 ~ 37352779 (+)
G162964 LOC108431875,LOC108413582 other upstream 2282183 36754185 ~ 36754687 (+)
ccpg1 ccpg1 other upstream 2867125 36132415 ~ 36169745 (+)
pygo1 pygo1 other upstream 2916468 36112042 ~ 36120402 (+)
reln reln other downstream 532664 39575089 ~ 39788454 (+)

Expression


Co-expression Network