G163465


Basic Information

Item Value
gene id G163465
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 39176200 ~ 39178877 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU221395
ggaatgttctccaccagtcttttacACTACTTTTGGGTGAacttatgccacttctggtgccaaaattcaagcagttcagtttggtttgatggcttgtgatcacctatcttcctcttgattatattctatagGTTTtaaatggggttcaggtctggagattgtgCTGGTCATGACAGGGTCTTGATCTGATGGCTCTTCCTCCACTCCGTAATTGATCTAGTTGTGTGGAAATGAGCATGGAAAAGAAAAGTCCTCAGAGTTGGGGGACATTACCAGAGCAGAAGGAAGCAAGTTTTCTTGTTTAACAGGATAATCTTGTATGTGGTTTGATTCATGCATCATTCACAAAAACCAAACAGCCCAATTCCAGAAACACCATCCCCAGATCATCAAAGATCCTCCACCAAATTTCACACTGGCTGCAGCTACACCTCTGCAGGTCTCCATCTAAACATTAGACAATCGGGTGTTGAGCAAAGCTAAAAATTGGAGTAATCAGAAAAAATGATCTTACTCCAGTTCCTTTATAGTCCAATTCTTTTGATCTTTTGGAAACTTCAGCCTGACTCTTCTTTGCTTCTTATAGAAGAAGGTCCTTTTCTAGCTTGAGTCCTGCCTCTAAGAGATTGTTTTGAACTGTTCTTTCCATGCACTTcaccccagctgccatttgccattctttttataggttcaaatacattcaaataagTTGACGGTCAATCTCCATACCTGAACCCAATTGAAAAACTTCTGAATCTgatgctgaactgcttgaatttttgtgccaggagtggaataagatcacccaaaagcagtgtgaaagactggtggagagcatgccgcgatgcatgaaagctgtgatttaaaatcacagtaattccaccaaatatttatttctaaagtcgtaaaacattagcattgttgtttctaaatatatatgaacTCATGGCATAGGCACGACTGCACAGGTGAAAGGAAACAGATTGATGCCTAAACTAAAAAGAGGATGGTTTCTACAACAAGCTCAAAATCCACAGTAAACTACCTGAAGCTCAGTGTTTGAATGGTCTCACAGTCCCCTGACCTTACAGTAACATTACAGTAAAGTTGTGGGCTGACCAGAAACAAGCTGTGAATGTAAGATGACCCAAGAACATCTCCAAATAAGAAGCATTCTGCCCAGAAGAGTGGGAAAAATACAGGAATTCTTAGTCTTTATAGTTAAAATTGATCTCTGTGAAGAGACAGAAAAGCACACAGGTTTTCCATAGTGTCACTGCGCAATATTGCACCACCATGAAGCCTATTTAGACtgttttataaatgtgaaaaaagctgCTCACGTGAAATTTAGATTTCCAAGCGTTTGTGTTGTGCATGAAATGTTGTGAATATAATGAATAGCAAAGTTTCTGTAAGAGAGCCTTTATAAGAAAAAGCTTTGAAAGCGAAAAGCACTATTACctgtaaacaaaaaacttttaaagtgaaaataaattttacgagaaaaggataaaatactatttaaattaatatatataatatatatataatgtgtgttttgttaATGGAAATATCAGatttcatttgatttatttagcctatttactgcttagttacttacttatatatgtgtatgaCTACATGCATAAATTTAGgctgtgtacattttattatattgtttcaatatatttattaaaaactgaGTAATCAATTTCAGACAAAATATCGCTTTTCACAGGGGATTGTTTAGCAAATACAAAATGTAATAGTAGATTACAGAAATTATACtttgtattatgtaaaattaGGATGATGCAACTTTGTACTTTCCGtatttttggcactataaggcacaccggattagaaggcgcattaagcgacactagtaaggaacagaggtgtcgccatgttttaattcagcaggtctcttgGCTAAACcaagaaaaacaaaagtaagcttagatttccagtattttagagcggttagcagcagcactagcacaAGTAAACTCCGCCAGACAGCGACGATACTacctagcggttcatcccacgtatcttgttttaactcagtaaacacgcagactacagtgaACGGTGAAcgagctagtgctgcggttagcagctaatgctaaaactgctcgAGCCCTGGTGAtggagaaactaaactgaaacttctgtataaatctgtacttcagcagagtgtctttactgctccttaatacctgactggttaaaattcatacataaggagcaccggattataagacgcactgttgatttttgggaaatttaaaggattttaagtgggccttatagtgcaaaaaaatctgtatattcCAGAATGTCAAATATGCCAGAAGGTTAAACATGTTCAGGTAACAGGGTTGAATGAATGTATTTATAGTTTGCATTTCTATAatctttatcttattttatttgtcaTATTGGAAGCTAAAATGTAGTATTTGTATTTTCGCTTTGCATTATATacatgtttatgtatatatttatatatacgtGGAACATGGGTTCTTTGTTCTTGGTATTACCTATTTAGCCCAAGCTAGAATGTAATTTTCAGTTCACACGGTGTGAGAACAACAACATGCAGGTTAATTGTGAAGtgtaaatgctttataaactttctaaataaataaataaacaagaaaacaaaa

Function

GO: NA

KEGG:

id description
ko04360 Axon guidance

RNA

RNA id representative length rna type GC content exon number start site end site
TU221395 True 2678 lncRNA 0.36 1 39176200 39178877

Neighbor

gene id symbol gene type direction distance location
LOC103046335 ch25hl1.2,LOC108435345,LOC107691130,LOC107725743,LOC107567893,LOC102790067 coding upstream 1062 39173324 ~ 39175138 (+)
LOC111194738 LOC104947953,LOC106536897 coding upstream 81393 39092479 ~ 39094807 (+)
LOC111194822 LOC107569781 coding upstream 225076 38946176 ~ 38951124 (+)
LOC111194723 LOC107704663 coding upstream 230296 38944402 ~ 38945904 (+)
LOC103021700 LOC103021700,LOC102310173,LOC102785042,LOC102211940,LOC101470544 coding upstream 1229951 37944201 ~ 37946249 (+)
tspan3 tspan3,tspan3a,LOC107690355 coding downstream 6345 39185222 ~ 39191405 (+)
pik3c2a pik3c2a coding downstream 93059 39271936 ~ 39337878 (+)
LOC103038446 LOC108443054,LOC108263931,LOC108265089 coding downstream 308889 39487766 ~ 39492076 (+)
LOC111194742 NA coding downstream 636119 39814996 ~ 39820624 (+)
LOC103034226 NA coding downstream 659160 39838037 ~ 39927918 (+)
G163444 NA non-coding upstream 46614 39107787 ~ 39129586 (+)
G163443 NA non-coding upstream 70151 39105805 ~ 39106049 (+)
G163421 NA non-coding upstream 85067 39053394 ~ 39091133 (+)
G163420 NA non-coding upstream 133775 39036870 ~ 39042425 (+)
G163386 NA non-coding upstream 256512 38917939 ~ 38919688 (+)
G163474 NA non-coding downstream 23456 39202333 ~ 39221652 (+)
G163491 NA non-coding downstream 70340 39249217 ~ 39249676 (+)
G163495 LOC107567882 non-coding downstream 78561 39257438 ~ 39263780 (+)
G163504 NA non-coding downstream 186717 39365594 ~ 39371719 (+)
G163587 NA non-coding downstream 249025 39427902 ~ 39428604 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other upstream 1764231 37409992 ~ 37411969 (+)
LOC103046025 hcn4,LOC108263998 other upstream 1823421 37287167 ~ 37352779 (+)
G162964 LOC108431875,LOC108413582 other upstream 2421513 36754185 ~ 36754687 (+)
ccpg1 ccpg1 other upstream 3006455 36132415 ~ 36169745 (+)
pygo1 pygo1 other upstream 3055798 36112042 ~ 36120402 (+)
reln reln other downstream 396212 39575089 ~ 39788454 (+)

Expression


Co-expression Network