G163504


Basic Information

Item Value
gene id G163504
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 39365594 ~ 39371719 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU221453
CAAACCCAGATGTTGTACTGACCTCATCCTGCTGAGGTTGTCTTTGGAGCTGGTGCAGGCCTGCTGGAACTGATCGATCTGCTGGGCCAGCGTGGTCTCCTGGAAGATCAGAGCATCCAGCTCAGACTGGAGATGATCCATCTGCTGCACGCGGGCCTGACTGTCCGCCGCACTCGACTGAGtgatgctgagagagagagagaaaccataAATCAGCTCATCCCACACGGCGTGAACACAACACGTACCTGAACACTGAGAGCACACCTGAGCTTCAGCTCACTGATACGCCGGGCCAGCTGCTCTTTATCCCGCTCCAAGTCCCTGACCGCCGTCTTCTGCCTGTGAAACGCAgcctaaaccacacacacacgcacgcacacacacacgcacaaacacacgcacgcacaaacacacgcgcacaaacacacgcacaaacacacgcacaaacacacgcacaaacacacgcacaaacacacgcacaaacacacgcacaaacacacgcacaaacacacgcacaaacacacacgcacacgcacaaacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU221453 True 547 lncRNA 0.55 3 39365594 39371719

Neighbor

gene id symbol gene type direction distance location
pik3c2a pik3c2a coding upstream 27716 39271936 ~ 39337878 (+)
tspan3 tspan3,tspan3a,LOC107690355 coding upstream 174189 39185222 ~ 39191405 (+)
LOC103046335 ch25hl1.2,LOC108435345,LOC107691130,LOC107725743,LOC107567893,LOC102790067 coding upstream 190456 39173324 ~ 39175138 (+)
LOC111194738 LOC104947953,LOC106536897 coding upstream 270787 39092479 ~ 39094807 (+)
LOC111194822 LOC107569781 coding upstream 414470 38946176 ~ 38951124 (+)
LOC103038446 LOC108443054,LOC108263931,LOC108265089 coding downstream 116047 39487766 ~ 39492076 (+)
LOC111194742 NA coding downstream 443277 39814996 ~ 39820624 (+)
LOC103034226 NA coding downstream 466318 39838037 ~ 39927918 (+)
LOC103039568 sox9 coding downstream 892944 40264663 ~ 40270386 (+)
LOC103036843 sstr5,LOC108241368,LOC103468864,LOC107083133,LOC106942343,LOC103140984,LOC102219310,LOC106518680 coding downstream 1387556 40759275 ~ 40765548 (+)
G163495 LOC107567882 non-coding upstream 101814 39257438 ~ 39263780 (+)
G163491 NA non-coding upstream 115918 39249217 ~ 39249676 (+)
G163474 NA non-coding upstream 143942 39202333 ~ 39221652 (+)
G163465 NA non-coding upstream 186717 39176200 ~ 39178877 (+)
G163444 NA non-coding upstream 236008 39107787 ~ 39129586 (+)
G163587 NA non-coding downstream 56183 39427902 ~ 39428604 (+)
G163606 NA non-coding downstream 182599 39554318 ~ 39561345 (+)
G163604 NA non-coding downstream 237763 39609482 ~ 39610032 (+)
G163689 NA non-coding downstream 418115 39789834 ~ 39790057 (+)
G163691 NA non-coding downstream 418646 39790365 ~ 39790787 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other upstream 1953625 37409992 ~ 37411969 (+)
LOC103046025 hcn4,LOC108263998 other upstream 2012815 37287167 ~ 37352779 (+)
G162964 LOC108431875,LOC108413582 other upstream 2610907 36754185 ~ 36754687 (+)
ccpg1 ccpg1 other upstream 3195849 36132415 ~ 36169745 (+)
pygo1 pygo1 other upstream 3245192 36112042 ~ 36120402 (+)
reln reln other downstream 203370 39575089 ~ 39788454 (+)

Expression


Co-expression Network