CI01000012_11698150_11702986


Basic Information

Item Value
gene id CI01000012_11698150_11702986
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 11697115 ~ 11703213 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_11698150_11702986.mRNA
ACATAAAAGTAAAAGAGAGACCATGAGCCCTCTCCCTGGAGTGAGCCAAAGAGCGAATCAAAGGCTATTCAAAGCTGAAACAGTGCAATGTCCTTTTTATCATGCTACATGTCTAGAAAGCATTTGTGTGTGTTTAAAGTGTGTGTGAAAGACAGAATGATTGGTCCACAATCGCTGACAAATTGTTTGGTGCTGTAAATCGGTTTATAATTACTACGTGTATACTATATGTGCTGAAAAAAGCCAATATCAGAGTTTGCGTTTGCTTCCTACTCAATTGACGATTGTTTTGAGACTGTGAAAGAGTCGTGACACTTTGAAATCAAGCAAGAATGCATTCAATTGGATTTCTGAATCCAGCAAAATATTCTCAAGGTTTGATCGCAAGAGAGAGTATTACTTCATGAACTTTTGTATTTATCTTCTCTATGTCCTTTCTACAAACCTTTGAAATGACTGTATTCACATCATGATAAAGAGTATTGTATCAGTTTTTTTCTCTCACACACAAGCTTACTTGTGATCCACCTGCTCTGAAGGCCAGTTGGTGTGGCCGAGTGTTTTGCGCTGCAGATGGCGCTGGATGAGGGAAGCTGGGTCATGCTGAAGGACTGACCACAGTGCTTCATCATACCGAGGGAAAGTGACCCTAAAGGTCACAGCACACACACAGGCTTAATTTTAGAGCAATTAATCTCCTCTCAAGAGAGTTTTATGTGTGAGCATGTGTGTGTGGGTGTGTCCTCCTGGGTCCTGTGCTGTAGTTAGAGCCGGCCGTCAGCTGTCCGGCCAAGGTGGAGGCCTAGCCATCTTATCGTCCAGGAGAAGCTTAATATGAGGAGATTAGATGGAACGGAGGAGATTACAGCTTGGCCTTTAATGCATCGTCCTCTTACCTAACAGGAACCTGATCTAAATCCACTACAGGGCAACAAGGCCATCACTCCAAGAGGATGTGTGACGTACACACAGACAGATACACACCAGACGTTGAGTGGGTGGCAAAAAAAAAAAAAAAACCCAGATGAAACAGCAATGGAAATGAAAGAGGCGGAGCTTTTGGTGAGAAAGAGTGAAAGAGTGAGGAGTCCTCAACGGGGCAGAAAATGGGCATGTGCTTGTGGTCCAGTGAAGCCCAGCCTCAGCTCAGCTCTTGCACCGCTGCCCCGCTCTGCTTCCAGATGTGGCCTCAGCCGCTTTTTTCTTATGTGGATTGAAATCAGCATTATGTCAGCTTTGCACTATGGTGGACTCGTGACAGATCAGGGCATTCAGGCTGGTGACATTCCTCCTGGCGAGCAGATCCATCCTGGGCCGGGGGTGAAAAATGCAGCGCCGCGCTGCTGCTCAGCTGCAGATGAATGGAGCTATCTGTCTTGTCACGAGGGGTCGGCGGGAGAGGTTACAGCCCAACTGTACCTGGTCTCCGGTGCTGACGCCTGCACACCGCTTTCCTTTACAAGGGAAGAAACAAAAAAAAAAGAAGAGAGGGAGGGAGAGAGAAAACAATCCTGCCCCATCAAGCACTTCTTCAGTCCCTCCAGAGCTCATCTCACTTCCCATCATCCCGCAGTCCTGCTGCCCTGAGAGCAGGCTTTGACACATCTATATGTTTTTCCTTCTGACCTTTCAACGTCCTTTCTGTCAGCGCCTGTAAACCATAAGCTGATGTATGAGGGCAATTTTTAGCGGTGCCACTTGTATCTGAGTGATTGCGCAAACTTTACATTTGGGGGGCCTGCCACCCTGCCACCTCCTCAACATCTCTTTATTTGCTTTGCTTGAGATTGAGGCAGAGAAACTGAAGGGAAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_11698150_11702986.mRNA True 1814 mRNA 0.47 3 11697115 11703213

Neighbor

gene id symbol gene type direction distance location
CI01000012_11616967_11694276 NA coding upstream 2831 11615547 ~ 11694284 (+)
CI01000012_11319849_11326035 NA coding upstream 370211 11319060 ~ 11326904 (+)
CI01000012_11277561_11292490 VRK2 coding upstream 404479 11277561 ~ 11292636 (+)
CI01000012_11091957_11093675 CCDC85A coding upstream 603341 11091957 ~ 11093774 (+)
CI01000012_11043669_11044569 NA coding upstream 652474 11043394 ~ 11044670 (+)
CI01000012_11859839_11869022 PAPOLG coding downstream 156536 11859749 ~ 11870657 (+)
CI01000012_11874504_11884601 REL coding downstream 171291 11874504 ~ 11885292 (+)
CI01000012_11897443_11903607 PDLIM1 coding downstream 194230 11897443 ~ 11903607 (+)
CI01000012_11913513_11921468 SGPL1 coding downstream 210300 11913513 ~ 11921935 (+)
CI01000012_11932267_11962143 NA coding downstream 229054 11932267 ~ 11962208 (+)
G76018 NA non-coding upstream 445013 11251817 ~ 11252102 (+)
G75588 NA non-coding upstream 511828 11185061 ~ 11185287 (+)
G75583 NA non-coding upstream 522400 11174487 ~ 11174715 (+)
G75578 NA non-coding upstream 528334 11168553 ~ 11168781 (+)
G76137 NA non-coding downstream 71326 11774539 ~ 11774869 (+)
G76138 NA non-coding downstream 71772 11774985 ~ 11775184 (+)
G76143 NA non-coding downstream 82267 11785480 ~ 11785691 (+)
G76146 NA non-coding downstream 83826 11787039 ~ 11787385 (+)
G76148 NA non-coding downstream 85478 11788691 ~ 11788909 (+)
G75533 NA other upstream 551376 11144817 ~ 11145739 (+)
CI01000012_10223957_10235955 NA other upstream 1472828 10223697 ~ 10236276 (+)
G73578 NA other upstream 3329488 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 3889260 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 5772810 5922385 ~ 5929186 (+)
G76385 NA other downstream 927542 12630755 ~ 12675666 (+)
G76374 NA other downstream 1042318 12745531 ~ 12749169 (+)
CI01000012_13029637_13033226 RGS17 other downstream 1312293 13029435 ~ 13038899 (+)
G76645 NA other downstream 1948646 13651859 ~ 13652234 (+)
G76656 NA other downstream 2000274 13703487 ~ 13739731 (+)

Expression


Co-expression Network