G163721


Basic Information

Item Value
gene id G163721
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 39980392 ~ 40013363 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU221721
atacaggggttggagaatgaaactgaaacacctggttttagatcacaataattgattgtggtgacggacagttctggtggaaacaggagagttgaggtgcacattgaattctgcgtgatttgatcagccgtggttttatgttttttttttggatacaatccgggttagcacccgaacatccctttcagacagcttcctcttacagcgtccacagttaatcctgttggatgtggttggtccctggataccgtggctcttgatgcatcacaaagacttgctgtcttggtcacagacgctccagcaagacgtgcaccaacaatttgtcctcttttgaactctggtatgtcacccataatgttgtg
>TU221722
ggacaatgaaacagaaacacctggttttagagcacaataattgattgtggtgacggacagttctggtggaaacaggagagttgaggtgcacattgaattctgcgtgatttgatcagccgtggttttatgttttttttttggatacaatccgggttagcacccgaacatccctttcagacagcttcctcttacagcgtccacagttaatcctgttggatgtggttggtccctggataccgtggctcttgatgcatcacaaagacttgctgtcttggtcacagacgctccagcaagacgtgcaccaacaatttgtcctcttttgaactctggtatgtcacccataatgttgtg
>TU221723
atacaggggttggagaatgaaactgaaacacctggttttagatcacaataattgattgtggtgacggacagttctggtggaaacaggagagttgaggtgcacattgaattctgccgtgatttgatcagccgtggttttatgttttttggataatgttgtgtgcattgcagtatttagagcagaactgtgctcttaccctgctaattgaaccttcacactctgctcttactggtgcaataatgtgcaattaatgaagattgaacaccaggctgctccaa
>TU221724
atacaggggttggagaatgaaactgaaacacctggttttagatcacaataattgattgtggtgacggacagttctggtggaaacaggagagttgaggtgcacattgaattctgcgtgatttgatcagccgtggttttatgttttttttttggatacaatccgggttagcacccgaacatccctttcagacagcttcctcttacagcgtccacagttaatcctgttggatgtggttggtccctggataccgtggctcttgatgcatcacaaagacttgctgtcttggtcacagacgctccagcaagacgtgcaccaacaatttgtcctcttttgaactctggtatgtcacccataatgttgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU221721 True 362 lncRNA 0.45 4 39980392 40013363
TU221722 False 351 lncRNA 0.46 2 40012988 40013363
TU221723 False 278 lncRNA 0.42 2 39980392 39980893
TU221724 False 362 lncRNA 0.45 3 39980392 40013363

Neighbor

gene id symbol gene type direction distance location
LOC103034226 NA coding upstream 52474 39838037 ~ 39927918 (+)
LOC111194742 NA coding upstream 159768 39814996 ~ 39820624 (+)
LOC103038446 LOC108443054,LOC108263931,LOC108265089 coding upstream 488316 39487766 ~ 39492076 (+)
pik3c2a pik3c2a coding upstream 642514 39271936 ~ 39337878 (+)
tspan3 tspan3,tspan3a,LOC107690355 coding upstream 788987 39185222 ~ 39191405 (+)
LOC103039568 sox9 coding downstream 251300 40264663 ~ 40270386 (+)
LOC103036843 sstr5,LOC108241368,LOC103468864,LOC107083133,LOC106942343,LOC103140984,LOC102219310,LOC106518680 coding downstream 745912 40759275 ~ 40765548 (+)
LOC111194726 sstr5,sstr2,LOC106601899,LOC101075299,LOC106606408 coding downstream 893778 40907141 ~ 40910721 (+)
rab26 rab26,LOC102798624,LOC100707100,LOC101484267 coding downstream 1134981 41148344 ~ 41319019 (+)
G163713 NA non-coding upstream 51578 39853379 ~ 39928814 (+)
LOC111194824 NA non-coding upstream 178200 39799040 ~ 39802192 (+)
G163693 NA non-coding upstream 186373 39793612 ~ 39794019 (+)
G163691 NA non-coding upstream 189605 39790365 ~ 39790787 (+)
G163689 NA non-coding upstream 190335 39789834 ~ 39790057 (+)
G163769 NA non-coding downstream 44979 40058342 ~ 40058608 (+)
G163772 NA non-coding downstream 96035 40109398 ~ 40114303 (+)
G163773 NA non-coding downstream 97708 40111071 ~ 40193224 (+)
G163789 NA non-coding downstream 186861 40200224 ~ 40200492 (+)
G163791 NA non-coding downstream 196080 40209443 ~ 40209704 (+)
reln reln other upstream 191938 39575089 ~ 39788454 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other upstream 2568423 37409992 ~ 37411969 (+)
LOC103046025 hcn4,LOC108263998 other upstream 2627613 37287167 ~ 37352779 (+)
G162964 LOC108431875,LOC108413582 other upstream 3225705 36754185 ~ 36754687 (+)
ccpg1 ccpg1 other upstream 3810647 36132415 ~ 36169745 (+)

Expression


Co-expression Network