CI01000012_11913513_11921468 (SGPL1)


Basic Information

Item Value
gene id CI01000012_11913513_11921468
gene name SGPL1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 11913513 ~ 11921935 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_11913513_11921468.mRNA
TTTGCTTAAGTGTCATTAGTGAAGCCAAGCTCCTGAGACAATTAAGTGTGACTCAATTCTCTATAAGTGCCTTGGAGGTGTATAAGGAGATGGTGCTGCTGTACATAGAGGAGGCTCGGCGCTTTGTGAATTCTCAGTGTGCTGGTCTGGAGCCATGGCAGATCATTGCGACCACTTTGCTGTCCACGCTCGGTGCCGTGTGGCTAAAGGGCTTCCTTTTTCAACAAGATAGCCTGACGTCAAGAGCAAAGAAACAATTCTTTAAAATCATCAGAAAAATCCCATTTGTCGGAGCAACAATTCAGAATCAGCTCAACAAAGCATTGGATGACATGTCAGTGAGTCTGTGCACACTGAAGGAAGGCATGAGCTACACCAAACTCCTTCCGGCACAAGGCCTCACCCAAAAACAGCTCCTTGACAAGATCAGGGAGTATGAGACATTGAGTGAGGTAGACTGGGCAAAAGGCAAGGTGTCAGGTGCAGTCTACTGGGGGGATGAGAAGCTCACAGATCTCCTGGTGAAGGTGTATGGTGATTTTGCCTGGTCCAACCCCCTTCACCCAGACCTGTTCCCTGGGGTTAGGAAGATGGAGGCCGAAGTGGTGCGGATGGCGTGTGCTCTATTTAATGGAGGGCCAGACTCCTGTGGCACAGTTACTTCAGGTGGAACAGAAAGCATCCTGATGGCGTGCAAGGCATACAGAGACATGGCTCATGAACGTGGCATCAAACACCCAGAGATCATTGCTCCAGTGAGCGTCCATGCGGCCTTCGACAAAGCTGCACATTACTTTGGGATGAAGCTCATTCACATACCTCTGGACAAGAAGACCATGAAAGTTGATGTGAAGGCCATGAGGAGGGCCATCTCTAGAAACACAGCAATGCTGGTGTGTTCAGCTCCTCAGTTCCCCCATGGAATTATAGACCCTGTAGGAGAAGTGGCGAAGTATGGTTATGCTCCCAAAGGCTCCTCAGTGGTGCTCTACAGTGACAGGAAATATCGCCACTACCAGTATTTCGTAGCGCCAGATTGGCAGGGAGGAATTTACGCGTCTCCATCCATGGCTGGCTCTCGGCCTGGAGGCATAATTGCAGCCTGTTGGGCTACTATGATGCACATGGGTGAGAACGGATACATTGAGGCCACCAAGAAAGTCATTGAGACAGCCCGCAAAATCAAAGCAGGAATCCGTGAAGTAGATGGGGTGTTTGTATTCGGGGATCCAGAGGTGTCTGTCGTGGCATTAGGTTCCAGTGTTTTTGATATCTTTCGCTTATCTAATGCACTGACTTCAAAGGGCTGGAATCTCAACACTCTGCAGTTCCCATCTAGCATTCATATTTGTGTCACAATGCTACACACAAAGCCTGGAGTAGCAGAGCAGTTTGTCAGTGATGTGAAGAGAGAAGTAGCCATTATCATGAAGAATCCTAAAGAGAAGACCACGGGAATGGGAGCGATCTATGGCATGGCCCAGTCCATTCCTGACCGATCGATGGTAACCGAGGTCTCACAGGGCTTTTTGGACTGCCTCTATAGCACTGAGGTGCCCAAGATACAGAACAAGCACCACAAAAACCATAAGAACCACATGAATGGCAACTCCAAAGTGCACTAAGATTGACTGCCAGGGTCTCCACCCTTAGCTGGCTGAAGGGATGCTCACCACAATCATCTAATCATTAATTTACTTCATTCAGTCATCTATTTACAACTAACTATTTTATGTATAAGCCATAGTCACCTGATATTTTGGGATTCGTGACTGAGGAGCAACAGTATCCTGTCTGTAAGACTATGGAGACAGCTGCACAAGTTTCTGTGTGAATCTGTGAAGGGTCTGGGACATCTTAGTCTAATTTTGGTGAGCAGTGAGTGCAGTTTTACTCGTTTCATTTCTTCAGTTTCTTATTTTTATGACCTGTGCGCACCATATGTATTTGATCACACTCCCACTGTTATTTTTGGAAGTGTTTTCTGACACTTAAACCTCAGGATACCAGGGAATAACGCTGTCACAATGATTTAACATCTGGTGGTTTTTCACCCAAGTTATTGACAAACAGTTTAGACAGTTTCTGGTAA

Function

symbol description
sgpl1 Predicted to enable sphinganine-1-phosphate aldolase activity. Predicted to be involved in sphingolipid catabolic process. Predicted to act upstream of or within carboxylic acid metabolic process. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including heart; intestine; kidney; liver; and yolk syncytial layer. Human ortholog(s) of this gene implicated in nephrotic syndrome type 14. Orthologous to human SGPL1 (sphingosine-1-phosphate lyase 1).

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01634 SGPL1, DPL1; sphinganine-1-phosphate aldolase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_11913513_11921468.mRNA True 2092 mRNA 0.47 13 11913513 11921935

Neighbor

gene id symbol gene type direction distance location
CI01000012_11897443_11903607 PDLIM1 coding upstream 9906 11897443 ~ 11903607 (+)
CI01000012_11874504_11884601 REL coding upstream 28221 11874504 ~ 11885292 (+)
CI01000012_11859839_11869022 PAPOLG coding upstream 42856 11859749 ~ 11870657 (+)
CI01000012_11698150_11702986 NA coding upstream 210300 11697115 ~ 11703213 (+)
CI01000012_11616967_11694276 NA coding upstream 219229 11615547 ~ 11694284 (+)
CI01000012_11932267_11962143 NA coding downstream 10332 11932267 ~ 11962208 (+)
CI01000012_11981083_11993407 RET coding downstream 59148 11981083 ~ 11994093 (+)
CI01000012_11995593_12005292 CGAT2, CSGALNACT2 coding downstream 73658 11995593 ~ 12005352 (+)
CI01000012_12016924_12024791 MCMBP coding downstream 94989 12016924 ~ 12025035 (+)
CI01000012_12054427_12060390 TIAL1 coding downstream 132492 12054427 ~ 12060390 (+)
G76261 NA non-coding upstream 17314 11895999 ~ 11896199 (+)
G76181 NA non-coding upstream 71702 11840055 ~ 11841811 (+)
G76152 NA non-coding upstream 119295 11794011 ~ 11794218 (+)
G76151 NA non-coding upstream 121364 11791948 ~ 11792149 (+)
G76150 NA non-coding upstream 121871 11791343 ~ 11791642 (+)
G76247 NA non-coding downstream 42589 11964524 ~ 11965309 (+)
G76212 NA non-coding downstream 103908 12025843 ~ 12029190 (+)
G76236 NA non-coding downstream 108355 12030290 ~ 12031920 (+)
G76281 NA non-coding downstream 111868 12033803 ~ 12034004 (+)
G76238 NA non-coding downstream 112580 12034515 ~ 12035608 (+)
G75533 NA other upstream 767774 11144817 ~ 11145739 (+)
CI01000012_10223957_10235955 NA other upstream 1689226 10223697 ~ 10236276 (+)
G73578 NA other upstream 3545886 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 4105658 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 5989208 5922385 ~ 5929186 (+)
G76385 NA other downstream 708820 12630755 ~ 12675666 (+)
G76374 NA other downstream 823596 12745531 ~ 12749169 (+)
CI01000012_13029637_13033226 RGS17 other downstream 1093571 13029435 ~ 13038899 (+)
G76645 NA other downstream 1729924 13651859 ~ 13652234 (+)
G76656 NA other downstream 1781552 13703487 ~ 13739731 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location