slc33a1 (slc33a1,LOC107711775,LOC107675614,LOC107748080)


Basic Information

Item Value
gene id slc33a1
gene name slc33a1,LOC107711775,LOC107675614,LOC107748080
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 27762391 ~ 27778466 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231546.3
AGTGGTTTGAGTGCTGCACCAGTGCAGACGCTGCGCTTCCTCGGTTTGTGGAGAGTGAAACTTCAGgagcagagagaaaacaggagGGTATATCTACACTAAACACCCCGCAAACACACCCGCACGCTAAACACACcgcacacaccttcacacagaGGATAATAGACCGTCTCATTTACCTTAATTCACTTTAAACCCTCGCGCCTGCATTCAGAACCGACATGCCGTACGGTGTTTCATCATGACAGGACATTTGCAGGCACAGCTGGTTTGAAGCCCTGCAAGCAAACATGGAGCTGTCTGAGTCCGTAAGGCATGCGAACGGGAGGCAGAGGAAACCTGTGGTGGTCATGAGTGATCAGGAAACTGTAGATGATGAAGAAGCCCTCATTCAGGACTCGGACAGCGGTGACAGAGCCCCCAGAGGTCACTGCAGTATCAGAGGAGAACTGGGCAATGTGTCCCTGCTGCTTTTCCTCTACGTCCTCCAGGGAATTCCGTTAGGACTGGCCGGCAGCATCCCGCTGGTCATGCAGAGCAAGAACGTCAGCTACAAAGACCAGGCCTACTTCAGCTTCGTCTTCTGGCCCTTTAGCCTGAAGCTGCTGTGGGCGCCACTGGTGGACTCGCTCTACATCCGGCGGTTCGGCCGGAGGAAATCCTGGCTGGTGCCCACTCAGTACCTCCTGGGGCTCTTCATGCTGGGGCTGTCGTTCACCGTGGACTCTCTGCTGGAGCAGAACGGATCAAAAGGACCAGACGTGGTCAGCTTGACCGCCGTCTTCTTCATGCTGGCTTTTCTGGCAGCCACACAGGACATAGCAGTAGACGGCTGGGCGCTGACCATGCTGTCCAGAGAGAACGTGGGATACGCTTCTACCTGTAACTCTGTGGGCCAGACTGCTGGATACTTCCTGGGGAATGTGCTGTTCCTGGCTCTGGAGTCAGCTGACTTCTGTAACAAGTACTTGAGGTTTGAGCCACAGCAAAAAGGGATTGTTACTCTGTCAGATTTCCTGTTTTTCTGGGGAATCGTGTTTATGGTGTCAACTACTCTTGTGGCCATCATAAAGAAGGAGGACAGCAGACAGCAGCACTCCAAAAAAAGGATGAAAGAGGAAACACATGGAGTTCTGGAGACCTATAAACAACTGTTCTCCATCATTAAGATGCCTGCTGTCTTCACCTTCTGCTGCCTGCTCCTCACATCCAAGaTGGGCTTTTCTGCAGCAGACGCTGTAACAGGACTAAAGCTTGTGGAAGCAGGTGTGCCTAAAGCTGAGCTGGCTCTCCTGGCTGTTCCCATGGTACCCCTGCAGATTCTGCTTCCGgtgatcatcagtaaatataCAGCTGGACCTCGACCTCTTGACATCTTCTACAAAGCCTTTCCTTTCCGCTTGCTGATAGGTCTGGAATATGCTCTGCTGGTGTGGTGGACTCCCAGTGTGAAGCATGAGGACGGCTTCCCTGTGTATTACTATGCTGTAGTGCTGCTCAGTTATGCTGTGCATCAGGTGGCACTGTACAGCATGTATGTGGCCTGCATGGCTTTTCATGCTAAGGTAAGCGATCCACTGATAGGGGGCACTTATATGACTCTGCTGAACACAGTGACCAATCTGGGGGGAAATTGGCCCTCCACTCTCGCCCTGTGGCTGGTGGACCCCCTCACATCTAAAGAGTGTCAGGGAGCAGTTGGCCAGACATGTGGGTCTCCTGAAGAAGCTGGGTTGTGTGTTAAAGAAGGTGGCATGTGTGTGACGGCGCTGGATGGCTACTATGTGGAGTCTCTGGTGTGTGTGGTAATTGGCCTGTGTTGGTGGATATTCTTCGGGAAGAAAATGAAGCGGTTACAGGAGGAGAGCCCAGCAGCGTGGCACTGCAGGGTCCGCAAATAGCACTAATACAAATGGACACAATGAGCCCAAAGCCTCGGACTTCTAAAGGAACTGTTCAAatgctaacattgctaacaatGAGTGAAAGCCAATCAGGAAGGAGTAAGTTTTCCAGACTGGATTTCACTCATCTGCAATGTCAGTGTATTTGAATGAAGTATGAGTTACACCTGTACACGTTTCCTTCTTTTCAGGATGCCTTTGCTCCTCCTCTTACTCTGTTTCTCATACATGTGCTTTCCTTTCCGGACTCTGGTTCAGTTTTAACTGGACTGAGAACTTCCATGATAAAAGAGAAATATTTATCCTTGTTCAGATGACAACGGTACAGTTTTTGTGTACTGTTTCATCATTACTGTGGCTGCTTCCTCTCCATCTCTAAATCggtttttaacagaaaaaagggcacacacacacactattagtAATTCACGATAGGTTAAAGTTCtgtactgtaatatactgtattgaCAAGGTAGCTGCTGCTCCATATTAATGTTCAACCATCAGTTCTCTTTGCTGAATATACAATCACACTGTCTGTTAACTGTAACCTGAGTTTATTGTGCcttgtgattgttttttttttttgttttttgcagtttataaAAATTCTTTACGTACAGTAGGACCTTTTTTAATAGAGTTGTTTGGTGAAAAATCAAATTATCCGATTTCTTATTTGTACTAAATGCTTTTGATCAGCCAACatatgtattcttttttttttttttagcttggaAAAAGAGATGGTAGGATAATGTTGCCTACAAACACTGGACTTCATCAACTTCTGTACTACCTGCATAAAAACttcaaaacaca
>XM_015600826.2
CATCTGAAGCGGCCGGAGTGGTTTGAGTGCTGCACCAGTGCAGACGCTGCGCTTCCTCGGTTTGTGGAGAGTGAAACTTCAGgagcagagagaaaacaggagGGACATTTGCAGGCACAGCTGGTTTGAAGCCCTGCAAGCAAACATGGAGCTGTCTGAGTCCGTAAGGCATGCGAACGGGAGGCAGAGGAAACCTGTGGTGGTCATGAGTGATCAGGAAACTGTAGATGATGAAGAAGCCCTCATTCAGGACTCGGACAGCGGTGACAGAGCCCCCAGAGGTCACTGCAGTATCAGAGGAGAACTGGGCAATGTGTCCCTGCTGCTTTTCCTCTACGTCCTCCAGGGAATTCCGTTAGGACTGGCCGGCAGCATCCCGCTGGTCATGCAGAGCAAGAACGTCAGCTACAAAGACCAGGCCTACTTCAGCTTCGTCTTCTGGCCCTTTAGCCTGAAGCTGCTGTGGGCGCCACTGGTGGACTCGCTCTACATCCGGCGGTTCGGCCGGAGGAAATCCTGGCTGGTGCCCACTCAGTACCTCCTGGGGCTCTTCATGCTGGGGCTGTCGTTCACCGTGGACTCTCTGCTGGAGCAGAACGGATCAAAAGGACCAGACGTGGTCAGCTTGACCGCCGTCTTCTTCATGCTGGCTTTTCTGGCAGCCACACAGGACATAGCAGTAGACGGCTGGGCGCTGACCATGCTGTCCAGAGAGAACGTGGGATACGCTTCTACCTGTAACTCTGTGGGCCAGACTGCTGGATACTTCCTGGGGAATGTGCTGTTCCTGGCTCTGGAGTCAGCTGACTTCTGTAACAAGTACTTGAGGTTTGAGCCACAGCAAAAAGGGATTGTTACTCTGTCAGATTTCCTGTTTTTCTGGGGAATCGTGTTTATGGTGTCAACTACTCTTGTGGCCATCATAAAGAAGGAGGACAGCAGACAGCAGCACTCCAAAAAAAGGATGAAAGAGGAAACACATGGAGTTCTGGAGACCTATAAACAACTGTTCTCCATCATTAAGATGCCTGCTGTCTTCACCTTCTGCTGCCTGCTCCTCACATCCAAGaTGGGCTTTTCTGCAGCAGACGCTGTAACAGGACTAAAGCTTGTGGAAGCAGGTGTGCCTAAAGCTGAGCTGGCTCTCCTGGCTGTTCCCATGGTACCCCTGCAGATTCTGCTTCCGgtgatcatcagtaaatataCAGCTGGACCTCGACCTCTTGACATCTTCTACAAAGCCTTTCCTTTCCGCTTGCTGATAGGTCTGGAATATGCTCTGCTGGTGTGGTGGACTCCCAGTGTGAAGCATGAGGACGGCTTCCCTGTGTATTACTATGCTGTAGTGCTGCTCAGTTATGCTGTGCATCAGGTGGCACTGTACAGCATGTATGTGGCCTGCATGGCTTTTCATGCTAAGGTAAGCGATCCACTGATAGGGGGCACTTATATGACTCTGCTGAACACAGTGACCAATCTGGGGGGAAATTGGCCCTCCACTCTCGCCCTGTGGCTGGTGGACCCCCTCACATCTAAAGAGTGTCAGGGAGCAGTTGGCCAGACATGTGGGTCTCCTGAAGAAGCTGGGTTGTGTGTTAAAGAAGGTGGCATGTGTGTGACGGCGCTGGATGGCTACTATGTGGAGTCTCTGGTGTGTGTGGTAATTGGCCTGTGTTGGTGGATATTCTTCGGGAAGAAAATGAAGCGGTTACAGGAGGAGAGCCCAGCAGCGTGGCACTGCAGGGTCCGCAAATAGCACTAATACAAATGGACACAATGAGCCCAAAGCCTCGGACTTCTAAAGGAACTGTTCAAatgctaacattgctaacaatGAGTGAAAGCCAATCAGGAAGGAGTAAGTTTTCCAGACTGGATTTCACTCATCTGCAATGTCAGTGTATTTGAATGAAGTATGAGTTACACCTGTACACGTTTCCTTCTTTTCAGGATGCCTTTGCTCCTCCTCTTACTCTGTTTCTCATACATGTGCTTTCCTTTCCGGACTCTGGTTCAGTTTTAACTGGACTGAGAACTTCCATGATAAAAGAGAAATATTTATCCTTGTTCAGATGACAACGGTACAGTTTTTGTGTACTGTTTCATCATTACTGTGGCTGCTTCCTCTCCATCTCTAAATCggtttttaacagaaaaaagggcacacacacacactattagtAATTCACGATAGGTTAAAGTTCtgtactgtaatatactgtattgaCAAGGTAGCTGCTGCTCCATATTAATGTTCAACCATCAGTTCTCTTTGCTGAATATACAATCACACTGTCTGTTAACTGTAACCTGAGTTTATTGTGCcttgtgattgttttttttttttgttttttgcagtttataaAAATTCTTTACGTACAGTAGGACCTTTTTTAATAGAGTTGTTTGGTGAAAAATCAAATTATCCGATTTCTTATTTGTACTAAATGCTTTTGATCAGCCAACatatgtattcttttttttttttttagcttggaAAAAGAGATGGTAGGATAATGTTGCCTACAAACACTGGACTTCATCAACTTCTGTACTACCTGCATAAAAACttcaaaacaca

Function

symbol description
slc33a1 Predicted to enable solute:proton symporter activity. Acts upstream of or within central nervous system neuron axonogenesis and negative regulation of BMP signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 42. Orthologous to human SLC33A1 (solute carrier family 33 member 1).

NR:

description
PREDICTED: acetyl-coenzyme A transporter 1

GO:

id name namespace
GO:0021955 central nervous system neuron axonogenesis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008521 acetyl-CoA transmembrane transporter activity molecular_function

KEGG:

id description
K03372 SLC33A1, ACATN; MFS transporter, PAT family, solute carrier family 33 (acetyl-CoA transportor), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231546.3 True 2726 mRNA 0.48 7 27762407 27778466
XM_015600826.2 False 2581 mRNA 0.48 7 27762391 27778466

Neighbor

gene id symbol gene type direction distance location
ssr3 ssr3,LOC107571207,LOC106581450 coding upstream 332610 27423510 ~ 27429781 (+)
LOC111194784 LOC107688027,LOC107751101,LOC107570926,LOC107731862,LOC106579815,LOC106606817 coding upstream 558481 27202494 ~ 27203910 (+)
LOC103022175 LOC103022175,LOC108437972 coding upstream 658797 27088875 ~ 27103594 (+)
veph1 veph1,LOC106613251 coding upstream 710192 26853880 ~ 27052199 (+)
LOC103030887 NA coding upstream 972638 26756582 ~ 26789753 (+)
plch1 plch1 coding downstream 26597 27805063 ~ 27965690 (+)
LOC103040346 LOC108437990,LOC108263991,LOC108264138,LOC108264137 coding downstream 190592 27969058 ~ 27977682 (+)
LOC103045576 LOC108437981,LOC108264123 coding downstream 293025 28071491 ~ 28077732 (+)
LOC107196882 LOC108434085,LOC108264118,LOC108434032 coding downstream 395144 28173610 ~ 28177986 (+)
LOC103044051 LOC108434085,LOC108264118,LOC108434032 coding downstream 402216 28180682 ~ 28184907 (+)
G161080 NA non-coding upstream 134969 27602859 ~ 27627422 (+)
G161079 NA non-coding upstream 175621 27586529 ~ 27586770 (+)
G161060 NA non-coding upstream 361204 27400961 ~ 27401187 (+)
G161017 NA non-coding upstream 423217 27338127 ~ 27339174 (+)
LOC111194785 NA non-coding upstream 525578 27235857 ~ 27236813 (+)
G161115 NA non-coding downstream 2388 27780854 ~ 27783189 (+)
G161129 NA non-coding downstream 114621 27893087 ~ 27893477 (+)
LOC111194734 NA non-coding downstream 252147 28030613 ~ 28035195 (+)
G161243 NA non-coding downstream 587702 28366168 ~ 28394028 (+)
LOC111194802 NA non-coding downstream 864855 28643321 ~ 28652309 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 643127 27109671 ~ 27119264 (+)
G160919 ptx3 other upstream 854764 26905244 ~ 26907627 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other upstream 1007078 26617262 ~ 26755313 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other upstream 1416709 26323820 ~ 26345682 (+)
G160306 NA other upstream 3642566 24119129 ~ 24119825 (+)
c18h3orf33 NA other downstream 6430 27784896 ~ 27796504 (+)
G161292 rap2b,LOC107757383 other downstream 843662 28622128 ~ 28624785 (+)
fam219b fam219b other downstream 967230 28745696 ~ 28759007 (+)
G161331 NA other downstream 1292354 29070820 ~ 29116795 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 2575220 30353686 ~ 30414212 (+)

Expression


Co-expression Network