LOC103045576 (LOC108437981,LOC108264123)


Basic Information

Item Value
gene id LOC103045576
gene name LOC108437981,LOC108264123
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 28071491 ~ 28077732 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231561.2
ATGATCTAAGTCTATTTGATGCCTGGAAATATGCCAGTCTGTGCACTGGTCCTGCTGAccttctttttgtttctcttgcccttggtTGAGTGCGGTAGTGCATGTCAGAGGTTAGGGGAATTTGTTCCACAGGTGCTGGAGACGGATGGTGATGTTATTATTGGAGGTCTTTTTCCTTTGCACTATATAGCTTCTGAACCTGACCATGATTTTACTGCTCAGGCACAGAGTACCACGTGTACAGGgtTTGACCTAAGAGCCTTCCGCTGGGTCCAGACCATGGTGTTTGCCATTGAGGAGATAAACAGGAACACCACACTTTTGCCAGGGGTGACACTTGGTTATCGGATTCTGGACAGCTGTGATCATGTCCACACCAGTCTCCAAAGTGCACTCTCTCTGGTCAATGGTTCTTCTGCCTTTCAAACTGATCAGTCAGCAGCAAGTCGCCCTCAATGCCTCTCCAGGGCTCCAGTTCCTGCTGTCATTGGGCTGGCTTCTTCCACACCAACCCGAGCAGTAGCCGACATTTTTGGACCCTTTGAGATCCCTCTGATCAGCTACTTTGCAACCTGCACCTGTTTGACCAATAAGAGGGTCTACCCCTCCTTTCTACGTACTGTTCCAAGTGATATTTTCCAAGTGCAAGCACTTGTGCAGTTGATGGCCGATTTCGACTGGCGTTGGGTGGGCACACTGGGCACAGATGAAGACTACAGTCGTTATGGCATCCAGGCCTTTACTGAGCAGCTGGAGGCATGGGGTGGTTGTGTGGCTTTTCACCACACCATCCCCAAGGTGCCCACTCCAAAGCAGATTGGTGCCATTGTTGATGCCTTAGAGGTCTCCACAGCTCGGGTCATTGTGGTGTTCGCCACAGAGGGCCAGCTCCTGGATCTACTGTTAGAGGTGGCACGCAGGAACCTGACAGGCTTGCAATGGGTGGCTAGTGAGGCCTGGGTGACTGCTACAATCCTGACAACACCAGAGCTCCAGCATGTGCTGTCTGGGACACTTGGGTTTTCCTTCAGGGGTGCCAACATCTCTGGATTGGCTGAATTCCTCCTGACAGTAAGGCCCTCACCTAGTCCTGGGTCTGCTTTCACTAATCAGTTCTGGGAGGAGCAATTTGGCTGCAGGCTGACTTATGGAGACAGTGAGGATTTAGGTAGGCCGTTCTGCTCTGGCCTGGAAGATCTGAAGCTGGTGGACAGCAGCTACACCAATGCAATTCCAGTGCGGGTTTCCTATAATGTTTATAAGGGAGTGTATGCCATTGCTCATGCTCTGCACAGCCTTCTACAGTGCACACCTGTGGGCTCAGACAAGATAGGCTGTAACACAGGGTCTGAGTTTACACCTGGACAGTTGCTTCACCACCTAAAGAGTGTGAACTTCACCAACCAGTTTGaagaaaaagtgtattttgACCACAATGGTGAGCCAGTGCCCCTGTATGACATGATCAACTGGCAGAGAAATGGCCGAGGTGGAATCCGGTTTCAGACTGTGGGTGGCTATGATGGTTCAGCCCCTCTTGGGCAGCAGCTCATAATGGATAGAAATTCAATAGAGTGGACGGGAAGGCAGAGCCAAGTACCTGTGTCTCTGTGCACGTCCTCATGTCCTCCTGGAACTAGGAAGGCCACAAGGCCAGGTCAGCCTGTCTGCTGTTTTGACTGCCTGCCTTGTGCTGAAGGGGAGTTCAGCAACACATCAGgagCCACAGAGTGCATCAGGTGTCCAGTGTACTATTGGTCCAATGTTGAGCGGGTGGCTTGTGTAGCTGGTATAGAGGAATTTCTTTCCTTTCAGGAAATCATGGGTATCGTCCTTGTTACCCTGTCCCTCCTCGGAGTTGCGGCAGCGACTGCTGTCTCAGTGATCTTTTTCCTCTTCCGGGCCACACCTATTGTCAAAGCCAACAACTCAGAGTTGAGTTTTCTGCTTTTGCTGTCTCTCAAGCTCTGCTTTCTGTGTTCTCTGGTGTTCATGGGTCGACCTTCACTGTGGTCCTGCCAGGCCAGACAGGCAGCGTTCGGCATCAGCTTCGTCCTCTGCATCTCCTGTATCCTGGTCAAGACCATTGTAGTGCTGCTGGCTTTTCGTTCCACCATGCCTGGGTCCTCCTCCCTTAAGCGCTTTGGGCCTCCTCAGCAGAGAGCCTTCATTGTGGGTTGCACTGCAGGCCAGGTGATCCTCTGTATGTCCTGGCTGGCACTAGCACCTCCTTACCCCTACAAGAACACATCCTATCAGGGTGGAAAGATTGTGCTGGAGTGCAAGGATGTATGGCCTCTGGGCTTTTATCTAGTGCTGGGTTACATTGGTCTCCTTTCATGTGTTTGCTTCATTTTGGCCTTTTTGTGCCGTAAGCTTCCAGATACATTTAATGAGGCCAAACTCATCACTTTCAGTATGCTAATATTTTTTGCAGTATGGATTTCTTTTATACCGGCATACAACAGCTCCCCTGGAAAGTACACAGTAGCAGTGGAGATATTTGCCATCCTTGCTTCAGCTTTTGGACTGCTGTTCTGCATTTTTGCTCCAAAATGTTACATTATTCTGCTGAGACCTGACCTCAACACCAAAAAAGGAATGACTGGGAAAACAGGCAAATGAACTCTTGATTTATGCTACAGTTTTCTGACATTCATGAAGCAACATTTCATCATAGTTCACCCATAATGTGACCAATCACCCCAAATATGTATGGCACTTGTAAGTCTGCATCATAGGTGGGTGTATCTACACAACATATGCAAGCAGATGCTCTATTACACTCATTGAATTGTATTGGGTTAACTATGAATATTACTATAAACAATAATGATGTTCATGTAATATATGTATGCTAATAAGcaataaagtttattttgtgAGCAATAA

Function

NR:

description
PREDICTED: extracellular calcium-sensing receptor-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231561.2 True 2892 mRNA 0.49 6 28071491 28077732

Neighbor

gene id symbol gene type direction distance location
LOC103040346 LOC108437990,LOC108263991,LOC108264138,LOC108264137 coding upstream 93809 27969058 ~ 27977682 (+)
plch1 plch1 coding upstream 105801 27805063 ~ 27965690 (+)
slc33a1 slc33a1,LOC107711775,LOC107675614,LOC107748080 coding upstream 293025 27762391 ~ 27778466 (+)
ssr3 ssr3,LOC107571207,LOC106581450 coding upstream 641710 27423510 ~ 27429781 (+)
LOC111194784 LOC107688027,LOC107751101,LOC107570926,LOC107731862,LOC106579815,LOC106606817 coding upstream 867581 27202494 ~ 27203910 (+)
LOC107196882 LOC108434085,LOC108264118,LOC108434032 coding downstream 95878 28173610 ~ 28177986 (+)
LOC103044051 LOC108434085,LOC108264118,LOC108434032 coding downstream 102950 28180682 ~ 28184907 (+)
LOC111194790 LOC108434085,LOC108264118,LOC108434032 coding downstream 108018 28185750 ~ 28195714 (+)
gpr149 gpr149 coding downstream 178240 28255972 ~ 28283318 (+)
dhx36 dhx36 coding downstream 222987 28300719 ~ 28386417 (+)
LOC111194734 NA non-coding upstream 36296 28030613 ~ 28035195 (+)
G161129 NA non-coding upstream 178014 27893087 ~ 27893477 (+)
G161115 NA non-coding upstream 288302 27780854 ~ 27783189 (+)
G161080 NA non-coding upstream 444069 27602859 ~ 27627422 (+)
G161079 NA non-coding upstream 484721 27586529 ~ 27586770 (+)
G161243 NA non-coding downstream 288436 28366168 ~ 28394028 (+)
LOC111194802 NA non-coding downstream 565589 28643321 ~ 28652309 (+)
LOC111194803 NA non-coding downstream 574820 28652552 ~ 29213664 (+)
G161302 NA non-coding downstream 590441 28668173 ~ 28764043 (+)
G161314 NA non-coding downstream 808710 28886442 ~ 28886800 (+)
c18h3orf33 NA other upstream 274987 27784896 ~ 27796504 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 952227 27109671 ~ 27119264 (+)
G160919 ptx3 other upstream 1163864 26905244 ~ 26907627 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other upstream 1316178 26617262 ~ 26755313 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other upstream 1725809 26323820 ~ 26345682 (+)
G161292 rap2b,LOC107757383 other downstream 544396 28622128 ~ 28624785 (+)
fam219b fam219b other downstream 667964 28745696 ~ 28759007 (+)
G161331 NA other downstream 993088 29070820 ~ 29116795 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 2275954 30353686 ~ 30414212 (+)
dhdds dhdds,LOC106582847,LOC106605152 other downstream 2776826 30854558 ~ 30894506 (+)

Expression


Co-expression Network