ssr3 (ssr3,LOC107571207,LOC106581450)


Basic Information

Item Value
gene id ssr3
gene name ssr3,LOC107571207,LOC106581450
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 27423510 ~ 27429781 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232086.2
TCCGTgattcagtgagtcagtgattcagtgtggtgtgtgtgttgttccgCCGGGCCGGCAGGCTGCGCTGGTGCGGCGGGGTGAGTCCGGGTCTGGGCTTGTGCTGACGCGGCGCTGgagcttctctctctcagaccGGGGAGAAGATACGTGTCAGTCCCTCTTTCAGCCGCAGACCAGCAGCAGAACAACAGAACCAGGATCAGGATCAGAGCCATGGCACCTAAAGGAGGCAGTAAACAGCAGTCTGAGGAGGACCTGCTGCTGCAGGACTTCAGCAGGAACCTCTCCGCTAAATCCACCGCGCTCTTCTACGGGAACGCGCTGATCGTCTCCGCCATCCCCATCTGGTTGTTCTGGAGGATCTGGCATATGGACCTGGTTCAGTCTGCAGTTCTCTATGCAGTTATGACTCTGGTCAGCACATACCTGGTGGCCTTTGCTTACAAAAACGTCAAGTTTGTCCTCAAGCACAAggTCGCTCAGAAACGTGAGGATGCTGTGTCCAAGGAAGTGACCCGCAAGCTGTCTGAGGCAGACAACCGCAAGATGTCCCGCAAAGAGAAGGACGAGAGGATCTTGTGGAAAAAGAATGAAGTGGCAGATTATGAAGCTACAACATTCTCTATCTTCTACAACAACACGCTGTTCCTCGTGCTCGTCATCGTCGCCTCTTTCTTCCTGCTGAAGAACTTCAACCCCACAGTGAACTACATTCTGTCCATCAGTGCCTCCTCTGGTCTCATCGCCCTCCTGTCCACAGGATCAAAGTGAGAAACAAAGAAGAATGAATTGAGAAACACAAAGTATTTTGGAGGGGCACACAAGGGGACTGATTGGTTCAGTGGGGGTTGTTTTTGTGGGTGGCACCGTGGGTGGAGGAAACAAGCATTTCATCTGTGGACTTTCATGAAATTCATGATCAGTGGATGCCAAGGGGTCATTTCTGACCTTCacccttcttttctttttatacaaataaatgagAATTGACCAAAAATAAA

Function

symbol description
ssr3 Predicted to act upstream of or within SRP-dependent cotranslational protein targeting to membrane. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including axis; hatching gland; otic placode; pectoral fin skeleton; and polster. Orthologous to human SSR3 (signal sequence receptor subunit 3).

NR:

description
Translocon-associated protein subunit gamma

GO:

id name namespace
GO:0006613 cotranslational protein targeting to membrane biological_process
GO:0005784 Sec61 translocon complex cellular_component
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component

KEGG:

id description
K13251 SSR3; translocon-associated protein subunit gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232086.2 True 1004 mRNA 0.51 5 27423510 27429781

Neighbor

gene id symbol gene type direction distance location
LOC111194784 LOC107688027,LOC107751101,LOC107570926,LOC107731862,LOC106579815,LOC106606817 coding upstream 219600 27202494 ~ 27203910 (+)
LOC103022175 LOC103022175,LOC108437972 coding upstream 319916 27088875 ~ 27103594 (+)
veph1 veph1,LOC106613251 coding upstream 371311 26853880 ~ 27052199 (+)
LOC103030887 NA coding upstream 633757 26756582 ~ 26789753 (+)
sema4b sema4b,LOC107714785,LOC107556264,LOC107691120,LOC107715225 coding upstream 1105122 26193982 ~ 26318388 (+)
slc33a1 slc33a1,LOC107711775,LOC107675614,LOC107748080 coding downstream 332610 27762391 ~ 27778466 (+)
plch1 plch1 coding downstream 375282 27805063 ~ 27965690 (+)
LOC103040346 LOC108437990,LOC108263991,LOC108264138,LOC108264137 coding downstream 539277 27969058 ~ 27977682 (+)
LOC103045576 LOC108437981,LOC108264123 coding downstream 641710 28071491 ~ 28077732 (+)
LOC107196882 LOC108434085,LOC108264118,LOC108434032 coding downstream 743829 28173610 ~ 28177986 (+)
G161060 NA non-coding upstream 22323 27400961 ~ 27401187 (+)
G161017 NA non-coding upstream 84336 27338127 ~ 27339174 (+)
LOC111194785 NA non-coding upstream 186697 27235857 ~ 27236813 (+)
G160994 NA non-coding upstream 250167 27173044 ~ 27173343 (+)
G160993 NA non-coding upstream 251572 27171643 ~ 27171938 (+)
G161079 NA non-coding downstream 156748 27586529 ~ 27586770 (+)
G161080 NA non-coding downstream 173078 27602859 ~ 27627422 (+)
G161115 NA non-coding downstream 351073 27780854 ~ 27783189 (+)
G161129 NA non-coding downstream 463306 27893087 ~ 27893477 (+)
LOC111194734 NA non-coding downstream 600832 28030613 ~ 28035195 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other upstream 304246 27109671 ~ 27119264 (+)
G160919 ptx3 other upstream 515883 26905244 ~ 26907627 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other upstream 668197 26617262 ~ 26755313 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other upstream 1077828 26323820 ~ 26345682 (+)
G160306 NA other upstream 3303685 24119129 ~ 24119825 (+)
c18h3orf33 NA other downstream 355115 27784896 ~ 27796504 (+)
G161292 rap2b,LOC107757383 other downstream 1192347 28622128 ~ 28624785 (+)
fam219b fam219b other downstream 1315915 28745696 ~ 28759007 (+)
G161331 NA other downstream 1641039 29070820 ~ 29116795 (+)
LOC103042463 tmod3,LOC108440576,LOC108264495 other downstream 2923905 30353686 ~ 30414212 (+)

Expression


Co-expression Network