LOC103038585 (rab5a,LOC103038585,LOC107688205,LOC107716989,LOC107707637)


Basic Information

Item Value
gene id LOC103038585
gene name rab5a,LOC103038585,LOC107688205,LOC107716989,LOC107707637
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 31559170 ~ 31583047 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232540.3
CCAGTTGTCAGTTCCAGTCACTCGGCCTGTCAGCGTTTACTTGTGAAGGAGGGGAAGTTGCGAAAAACAAACGGTGGGGAGGACACAGCTGCACTGTCCTGGTTCTTTTGATCGGTATCTTCTTCACCTGGGCTCTGACACCTGATCTGGGGGTCCAGAAACCTTCCTAACTCACCTGGAAAGCAGAGTAATCAATTGGAAATCACCTCAAGTCCCGAAGAGGCGACTGGCGTCTAGGTCATGGCAGGAAGAGGCGGAGCTACAAGACCGAATGGGCCGAACGCAGCCAGCAACAAAATCTGTCAGTTCAAGCTGGTGTTGCTGGGAGAGTCCGCAGTGGGGAAGTCCAGCCTGGTCCTCCGCTTCGTCAAAGGCCAGTTCCACGAGTTTCAGGAGAGCACGATAGGAGctGCATTCCTGACTCAGACAGTATGTTTGGACGACACGACAGTGAAGTTCGAGATCTGGGACACAGCTGGTCAGGAACGCTACCACAGTTTGGCTCCCATGTATTACAGAGGAGCGCAGGCCGCCATAGTGGTGTATGACATCACGAACGAAGAATCGTTTGCACGTGCAAAGAATTGGGTGAAGGAGCTTCAGAGGCAAGCCAGTCCCAATATCGTAATAGCTTTGGCTGGGAACAAGGCGGACCTCGCAAACAAGAGAGCACTGGACTTTCAGGACGCACAGTCTTACGCAGACGACAACAGTCTGCTGTTTATGGAGACGTCAGCGAAGACGTCGATGAACGTGAACGAGATTTTTATGGCTATAGCAAAGAAGCTTCCCAAGAGCGAGCCACAGCCTGCCGGAGCGAGCACGGGCCGGAACCGAGGAGTGGACCTTGCAGAGACTGCCCAGCCTGCCAAAGGGCCGTGCTGCAGCAACTAaccaacacacacctcaccTCCCAACTAACTCTGCATCACTTCGGGACATGGGGCGCATCCTTCCAAACCTCGCTCCCTGGAACTGCTAAAGACTCTGTATAGCTATGTTTCTAATACCTGTTTttgtttcgttttgtttttttcttttcttttcttttcttttttacttttattttttaagaaattataAGTACTTCAGTATAATGGATGCATGTATCACTACAAAGCCTAAAGTACACGTTTTTAACTTAACTCAGCAGGAAAG

Function

symbol description
rab5a Enables GDP binding activity; GTP binding activity; and GTPase activity. Involved in several processes, including amyloid-beta clearance by transcytosis; early endosome to late endosome transport; and regulation of exocytosis. Located in several cellular components, including cytoplasmic side of early endosome membrane; nucleoplasm; and terminal bouton.

NR:

description
ras-related protein Rab-5A

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K07889 RAB5C; Ras-related protein Rab-5C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232540.3 True 1158 mRNA 0.50 6 31559170 31583047

Neighbor

gene id symbol gene type direction distance location
fam110d LOC108426366 coding downstream 491083 31030479 ~ 31068087 (-)
LOC103040377 ago1,LOC103040377,LOC105028369,LOC108256363,LOC107082980,LOC103367053,LOC102230823 coding downstream 713533 30791792 ~ 30845637 (-)
LOC111194850 NA coding downstream 900725 30657372 ~ 30658445 (-)
LOC111194849 NA coding downstream 918484 30635521 ~ 30640686 (-)
mapk6 mapk6 coding downstream 1373635 30145969 ~ 30185535 (-)
plcl2 plcl2,LOC107688208,LOC107592112,LOC107671457 coding upstream 614538 32197585 ~ 32318875 (-)
LOC111194816 NA coding upstream 739838 32322885 ~ 32342049 (-)
LOC111194735 LOC108439303,LOC103388343 coding upstream 1007849 32590896 ~ 32599250 (-)
LOC103041900 LOC103041900,LOC107592163,LOC103356858,LOC107688211 coding upstream 1032486 32615533 ~ 32651073 (-)
LOC103040777 LOC103040777,LOC108439298,LOC108256343,LOC107711540,LOC107671441 coding upstream 1119924 32702971 ~ 32719382 (-)
G161971 NA non-coding downstream 5344 31553049 ~ 31553826 (-)
G161954 NA non-coding downstream 223289 31335646 ~ 31335881 (-)
LOC111194815 NA non-coding downstream 314925 31240625 ~ 31244245 (-)
G161933 NA non-coding downstream 350673 31180632 ~ 31208497 (-)
LOC111194813 NA non-coding downstream 470820 31087590 ~ 31088350 (-)
G161979 NA non-coding upstream 31045 31614092 ~ 31614569 (-)
G161982 NA non-coding upstream 36147 31619194 ~ 31619579 (-)
G161999 NA non-coding upstream 238687 31821734 ~ 31821989 (-)
G162000 NA non-coding upstream 252881 31835928 ~ 31836143 (-)
G162004 NA non-coding upstream 288766 31871813 ~ 31872590 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other downstream 777462 30699170 ~ 30781708 (-)
G161711 NA other downstream 1233312 30315606 ~ 30325858 (-)
LOC103037190 NA other downstream 2617783 28886911 ~ 28941387 (-)
LOC111194804 NA other downstream 2906223 28593500 ~ 28652947 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other downstream 3980252 27429941 ~ 27578918 (-)
tap1 NA other upstream 1068921 32651968 ~ 32675269 (-)
LOC103042403 slc25a32,LOC102777849,LOC107756894,LOC107726671,LOC107688281 other upstream 2514881 34097928 ~ 34115402 (-)
LOC103026784 thsd7a other upstream 2817616 34400663 ~ 34731072 (-)
c18h15orf65 NA other upstream 4555856 36138903 ~ 36140897 (-)
onecut1 onecut1 other upstream 4756333 36339380 ~ 36354701 (-)

Expression


Co-expression Network