LOC103041297 (LOC103041297)


Basic Information

Item Value
gene id LOC103041297
gene name LOC103041297
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 32721244 ~ 32729851 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007233722.3
ACGAGAGTCCCTCTGCTTTCTGTTCCACTCTATTTTCTGCTTTCTCACGCAAAACAACCGATTCCACGGGTTTTTAAGAAATATGGGCCATGTCAATAGGGGTGGGTCGAGGCTTTAgagaaggaagaggaagaaactCTCTTCAGCAAGTCACAGTGGGAGAGAGCGGCTTCACGCGCACTGTGCGTGTGACGGCTCTTAAATCTCTAATTAATTTCTTTTAGGGGACGAATTTGCCAGTTCAAATCAGGCATGAACTagctgagctgttttttgtgtgtttgctcAAGGAGGTGAAGCCTGTGAGGGCCATGCCATATACACCAGCTGCAGTTTAGAGGAGGACTTTCATTTCAGCTTCTGGAGGAGTGGAGGAAGGTTCCCATATCTGCTGGATGACTGAGGGACACAGCAGCGGACGCTGACATGGACTGCGAGGAGGTCAAAGGTGAAAGCCCGGCGGACGAGCAGTTGGAGCCCCTGCTTATTTTGGAGGAGGGGGACGAGCCGGAGGAGTTCACAAACAAGACGGCCAGAGGGAAAGGAACACTGAGGGTGAAGAACGCAGAGGAACACGAGGATGAAGTCGCTGGTGCTAAAGTGGGAGAAGGTGAGCATGAGGACATAGAGGTCAACGAGGAGATTGTGGTGAAGCTGGAAGATCAGGAAAATAAGGAGGCACTACTGGAAAACCAAGCCAAAGCCGAAGTGGTTGAACAAGTGGCGGGAAAAGAGGAACGCTTGTCGGAAGGGACACTGGAGGCTGCTGAGGAGGTCAACGTCCAAGCTGGAGGGGGACTGGTGAATGTGGACAAGGCTGAAGAGGGAGAAATGGAGGAGCAACACGAGAAGACCACTACTACTGACGTAGTTGCAGCAGAGAAGCTTCAAGTTAGTCCAGAGATCCAATCACAGGCTAAGTTACGGCCCAAAGACCTCCTGAGGCCTGAAGATGCTCTGCAAAAGGTCCACCGGCTGTCCCATGATTTCCCCGATACTCTGTACGAGCTGCTGTGTACCCTGCAGGAGGGCCGGAGGCTCAACGACCAGCGCTGCTCCTTCAGACTGGAGGGGCGGAGGAGGTGTTACTCGGAGCCCAGCACCCCCCGACACAGTCAGAAAGGTAAGGTGCCAGCTGTTTACCAGTACCCATCCCATTACCCAGCCCAGTACCTGTAGcagtgtagctgtagcactgttgctattagcaaTTTGCTACTGATTTAGCCTGTGCTGAGAAGTTTATCTCTGACTGCCATAGGAAACTAATGAATgcctgtcgctttccagtgtgaacacagggttAGGCActcg

Function

NR:

description
uncharacterized protein LOC103041297

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007233722.3 True 1314 mRNA 0.52 3 32721244 32729851

Neighbor

gene id symbol gene type direction distance location
LOC103041596 LOC108439295 coding upstream 19640 32681742 ~ 32701604 (+)
LOC107196951 NA coding upstream 155354 32377101 ~ 32565890 (+)
satb1 satb1,LOC107569796 coding upstream 918681 31688052 ~ 31802563 (+)
znf385d znf385d,LOC107688204 coding upstream 1206603 31381217 ~ 31514641 (+)
slc9a1 slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107552533,LOC107564092 coding upstream 1465936 31164038 ~ 31255308 (+)
LOC103040053 LOC103040053,LOC108412368,LOC105891959,LOC108256617,LOC101464589,LOC102196503 coding downstream 52223 32782074 ~ 32879256 (+)
LOC103039334 LOC108412369,LOC107726662,LOC107671466,LOC107711537,LOC107592120,LOC107592485 coding downstream 175803 32905654 ~ 32915649 (+)
LOC103043655 eif3h coding downstream 188292 32918143 ~ 33043136 (+)
LOC103027235 LOC107671459,LOC107688260,LOC108256161,LOC105891721 coding downstream 474856 33204707 ~ 33997444 (+)
LOC103045871 cthrc1b,cthrc1,LOC108256451,LOC107726655,LOC105891862,LOC107592186,LOC107688280,LOC108413588 coding downstream 1341308 34071159 ~ 34092737 (+)
G162107 NA non-coding upstream 33700 32678351 ~ 32687544 (+)
G162099 NA non-coding upstream 66079 32652026 ~ 32655165 (+)
G162087 NA non-coding upstream 85755 32633971 ~ 32635489 (+)
G162046 NA non-coding upstream 105775 32613718 ~ 32615469 (+)
G162043 NA non-coding upstream 141476 32577270 ~ 32579768 (+)
G162111 NA non-coding downstream 6578 32736429 ~ 32739609 (+)
LOC107196950 NA non-coding downstream 12136 32741987 ~ 32744007 (+)
G162239 NA non-coding downstream 437866 33167717 ~ 33168151 (+)
G162247 NA non-coding downstream 446279 33176130 ~ 33176329 (+)
G162250 NA non-coding downstream 467114 33196965 ~ 33197176 (+)
G162096 LOC103040777,LOC108439298,LOC108256343,LOC101172525 other upstream 1969 32714183 ~ 32719275 (+)
G162032 NA other upstream 426215 32236316 ~ 32295029 (+)
G162017 NA other upstream 573054 32068862 ~ 32148190 (+)
efhb NA other upstream 1115754 31584746 ~ 31605490 (+)
dhdds dhdds,LOC106582847,LOC106605152 other upstream 1826738 30854558 ~ 30894506 (+)
ss18l2 ss18l2,kiaa0355 other downstream 3078014 35807865 ~ 35814793 (+)
pygo1 pygo1 other downstream 3382191 36112042 ~ 36120402 (+)
ccpg1 ccpg1 other downstream 3402564 36132415 ~ 36169745 (+)
G162964 LOC108431875,LOC108413582 other downstream 4024334 36754185 ~ 36754687 (+)
LOC103046025 hcn4,LOC108263998 other downstream 4557316 37287167 ~ 37352779 (+)

Expression


Co-expression Network