prpf18 (prpf18,LOC107671164,LOC107719961)


Basic Information

Item Value
gene id prpf18
gene name prpf18,LOC107671164,LOC107719961
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 8555188 ~ 8565498 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007233833.3
CGTTCTGCGGCCCCCAACACAGGCAGGAACTCACCAGATACAACTTCCACAACAGTCTGGGAGCTGTAGGATTCAAAATCAGCGTGTTTAGCGAAAACCCGCTACTCTGCGCTCATAAACATGGATATCCTAAAAGCCGAGATCGCGAGGAAGAGGAAGCTGATGGAGGAGAAACAGCTGGTTGATAGCTCAAAGAAGTACTTTAAGCGTGCTGATCTAGCCCGAAAGGAGGAAGAAGAATACTACAAAAGATGTGGCTACAAGgTTGCTCATGAACAGCCTGTGACTCAGGTGGACAAGAAGGAGGAGGCCGCCCCATCTACTTCATCCAATCCTGTGTTGGAGTTGGAGCTCACAGAGGAGAAGTTACCAATGACCCTGTCTCGACAGGAGGTGATTCGGCGTCTGAGGGAGCGCGGGGAGCCCATCCGTCTGTTTGGAGAGTCTGATTATGATGCATTTCAGAGACTCCGAAAGATTGAGATTCTTGCACCAGAAGTGAACAAGGGCTTGAGGAACGATCTGAAGGCTGCCATGGATAAAATCGATCAGCAGTACCTAAATGAGATTGTTGGAGGACAGGAGCCTGGAGATCCTGACACACAGCATGATCTGAAAGTGCATGAAGAAAATACCACCATCGAGGAGTTGGAGGCTCTGGGGGCGTCTCTGGGCACTGGAGATGATGTAGGAGACATGGACGTCATAAACAAAGTGCTGCGGTTCTTGCTGGGTGTGTGGGCTAAAGACCTGAATGGAAGAGAAGACCATGTGAAGCGCAGTGTACAGGGAAAGCTGGCCAGTGCCACACAGAAACAGACCGAATCTTACCTCGAGCCTCTCTTCAGAAAACTACGCAAGAAGacctTGTCTGCAGACATTAAGGAATCCATCACAGACATCATCAAGTTCATGCTGGAGAGAGAATATGTGAAGGCAAATGATGCATACCTGCAGATGGCGATAGGAAACGCCCCATGGCCCATCGGTGTGACCATGGTGGGTATTCACGCTCGTACAGGTCGTGAGAAGATCTTCTCCAAACACGTTGCTCATGTTCTTAACGACGAAACCCAGAGAAAGTACATCCAGGGTCTGAAGAGGTTAATGACTATCTGTCAAAAGCATTTCCCCACAGATCCTTCAAAATGTGTGGAATACAACGCCCTCTAACTGTCAacccaacacacaaacacatacacttcTGCACTAATGCCAAGTCCTTCTttcttttgtaaataaataatctgaTGTAAATATCACTTTGTCActtgaataaatgtttttaaatgaaactgTA
>XM_007233834.3
CGTTCTGCGGCCCCCAACACAGGCAGGAACTCACCAGATACAACTTCCACAACAGTCTGGGAGCTGTAGGATTCAAAATCAGCGTGTTTAGCGAAAACCCGCTACTCTGCGCTCATAAACATGGATATCCTAAAAGCCGAGATCGCGAGGAAGAGGAAGCTGATGGAGGAGAAACAGCTGGTTGATAGCTCAAAGAAGTACTTTAAGCGTGCTGATCTAGCCCGAAAGGAGGAAGAAGAATACTACAAAAGATGTGGCTACAAGGTGGACAAGAAGGAGGAGGCCGCCCCATCTACTTCATCCAATCCTGTGTTGGAGTTGGAGCTCACAGAGGAGAAGTTACCAATGACCCTGTCTCGACAGGAGGTGATTCGGCGTCTGAGGGAGCGCGGGGAGCCCATCCGTCTGTTTGGAGAGTCTGATTATGATGCATTTCAGAGACTCCGAAAGATTGAGATTCTTGCACCAGAAGTGAACAAGGGCTTGAGGAACGATCTGAAGGCTGCCATGGATAAAATCGATCAGCAGTACCTAAATGAGATTGTTGGAGGACAGGAGCCTGGAGATCCTGACACACAGCATGATCTGAAAGTGCATGAAGAAAATACCACCATCGAGGAGTTGGAGGCTCTGGGGGCGTCTCTGGGCACTGGAGATGATGTAGGAGACATGGACGTCATAAACAAAGTGCTGCGGTTCTTGCTGGGTGTGTGGGCTAAAGACCTGAATGGAAGAGAAGACCATGTGAAGCGCAGTGTACAGGGAAAGCTGGCCAGTGCCACACAGAAACAGACCGAATCTTACCTCGAGCCTCTCTTCAGAAAACTACGCAAGAAGacctTGTCTGCAGACATTAAGGAATCCATCACAGACATCATCAAGTTCATGCTGGAGAGAGAATATGTGAAGGCAAATGATGCATACCTGCAGATGGCGATAGGAAACGCCCCATGGCCCATCGGTGTGACCATGGTGGGTATTCACGCTCGTACAGGTCGTGAGAAGATCTTCTCCAAACACGTTGCTCATGTTCTTAACGACGAAACCCAGAGAAAGTACATCCAGGGTCTGAAGAGGTTAATGACTATCTGTCAAAAGCATTTCCCCACAGATCCTTCAAAATGTGTGGAATACAACGCCCTCTAACTGTCAacccaacacacaaacacatacacttcTGCACTAATGCCAAGTCCTTCTttcttttgtaaataaataatctgaTGTAAATATCACTTTGTCActtgaataaatgtttttaaatgaaactgTA

Function

symbol description
prpf18 Predicted to be involved in generation of catalytic spliceosome for second transesterification step and nuclear retention of unspliced pre-mRNA at the site of transcription. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nuclear speck. Predicted to be part of U2-type post-spliceosomal complex; U4/U6 x U5 tri-snRNP complex; and U5 snRNP. Orthologous to human PRPF18 (pre-mRNA processing factor 18).

NR:

description
pre-mRNA-splicing factor 18 isoform X2

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component

KEGG:

id description
K12817 PRPF18, PRP18; pre-mRNA-splicing factor 18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007233833.3 True 1300 mRNA 0.47 11 8555188 8565498
XM_007233834.3 False 1273 mRNA 0.47 10 8555188 8565498

Neighbor

gene id symbol gene type direction distance location
cpt1b cpt1b,LOC100329197,LOC107599889,LOC107671150,LOC107686536 coding upstream 22021 8520018 ~ 8533167 (+)
LOC103026556 LOC108264446 coding upstream 41757 8508404 ~ 8513431 (+)
chkb chkb,LOC107577700 coding upstream 47693 8494840 ~ 8507495 (+)
pgc LOC108440932,LOC108441008 coding upstream 80717 8466873 ~ 8474471 (+)
arsa arsa,LOC100304877,LOC102794702 coding upstream 123135 8423666 ~ 8432053 (+)
LOC111194761 NA coding downstream 254604 8820102 ~ 8826458 (+)
LOC103043520 NA coding downstream 265931 8831429 ~ 8836613 (+)
LOC103030146 impdh1,impdh1a,LOC108442450,LOC107559456,LOC107665545,LOC107710381,LOC107599814,LOC106561215,LOC103030146 coding downstream 279478 8844976 ~ 8871398 (+)
LOC103031618 NA coding downstream 332079 8897577 ~ 8902959 (+)
rbm28 NA coding downstream 339237 8904735 ~ 8919978 (+)
G157027 NA non-coding upstream 116919 8432614 ~ 8438269 (+)
G157022 NA non-coding upstream 193438 8361520 ~ 8361750 (+)
G157019 NA non-coding upstream 198111 8356218 ~ 8357077 (+)
G156917 NA non-coding upstream 694548 7846615 ~ 7860640 (+)
LOC107197493 NA non-coding upstream 705310 7846483 ~ 7849878 (+)
G157052 NA non-coding downstream 931 8566429 ~ 8567668 (+)
G157054 NA non-coding downstream 2746 8568244 ~ 8568463 (+)
G157064 frmd4a non-coding downstream 38091 8603589 ~ 8608021 (+)
G157069 NA non-coding downstream 115311 8680809 ~ 8683103 (+)
G157210 NA non-coding downstream 326592 8892090 ~ 8894941 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other upstream 948520 7600567 ~ 7606668 (+)
LOC111194759 NA other upstream 1123620 7372376 ~ 7431568 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other upstream 1383563 7093507 ~ 7171625 (+)
G156188 NA other upstream 3397788 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 3917898 4575668 ~ 4637290 (+)
G157055 NA other downstream 4432 8569930 ~ 8570877 (+)
G157383 NA other downstream 1375331 9940829 ~ 9941805 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other downstream 2007245 10572743 ~ 10591523 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other downstream 2135290 10700788 ~ 10713982 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other downstream 2186201 10751699 ~ 10754698 (+)

Expression


Co-expression Network