chkb (chkb,LOC107577700)


Basic Information

Item Value
gene id chkb
gene name chkb,LOC107577700
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 8494840 ~ 8507495 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007233841.3
CGGCTGACGAGTGGACCGTAAGGCGGAAACGGGAGAAAGGCCGTATTGTTGAAGCGGTCGGTtagttagaaagggcggaagaGCCACCCGGGACCGGGTTTAGTTTGCTAGATTAGCCAGCTGACAGTCTGCGGAGCTGAGAGCCGGACGGGGCGGTGCGGAAGTTCTGCGCAGCTAAAGTGAGGAAGGGGTCCCCGCTTCTCGTAAGAACGTAAGCCGGGGGAGGGTAGTATGCAGGCGGTCCACGGTCTGGTAAGAAGCGCCGGTGATGGAGCTCCGAGCGCTAGTACCGCGTCTAAATGCGGTGCAAGATGCGGCGAAGAGGAGCCGGAGGAGCTGAACCTGAGGGTGTCCGCTCTCCGCGAGGGTAACGGGGACGAGGACTCGGAGGCAGAGTCGTACCGAGACGGACGGACCGGTGAAGTGGACCGCGAGACCCGGGCCCGGGCTTTCGCCTGGTGCCGAGACTTTCTCTCCGGGTCGTGGAAAAGTATCGCAGAGGCGGACTTTCAGATCAGCATAGTGAGTGGAGGACTCAGCAATCTGCTCTACAAATGTAGTTTGCCTGATCACATTAAGCCGGTTGGGGTGGAGCCCTCACGAGTGCTGCTCCGTATCTATGGAGCCATTTTACAGgaaGTGGAATCCTTGGTGTCTGAGAGCGTGATGTTTGCCATTCTAGCGGAGCGAAAGCTGGGTCCTCGTCTCTACGGCATTTTCCCAGAGGGCCGTCTGGAGCAGTATCTTCCTAGTAAGCGATTGCACACGGAGCACCTGCAGGTACCAGACATCTCCGCTGAAATAGCCTGTAAGATGGCACGCTTCCACCGCATGGTCATGCCCGTCAATAAGGAACCAAGATGGCTCTTTGCAACTATCGACAAgtacatgaaaaaaataatgaatactaCATTTGAACGTGAGGCTCACATCAAGAAGTTCAAGAAGCTGATGAAGTATGACCTTCCTGCTGAGCTagcaagtctgagagcaCTGCTGGCAGCGACTCCTTCACCCGTGGTGTTCTGTCACAATGACGTTCAGGAAGGGAACATCTTGATGCTGGATGGCCGAGACCGGAACTCATCCGATAAGCTGATGCTCATAGACTTTGAGTACAGCAGCTACAATTACAGGGGTTTTGATTTTGGGAATCATTTCTGTGAGTGGGTGTATGACTACACTCATGATCAGTGGCCCTTTTTTAAGGCGAACCTGGACAACTATCCAAACAGGCAACAGCAGCTGCACTTCATCAGAAACTACTTGTCAGAATGTGAAGATAATGTACCTGAAGACCAAGCCAAGATAGAGGAGGATATTATTATTGAGGCAAACAGGTATGCCCTTGCTTCTCATTTCCTTTGGGGTCTGTGGTCCATTGTTCAAGCCAGAATCTCCAAAATTGAATTTGGATACATGGATTACGCCCAGCACAGGTTTGACTCCTACTTCAAGCAGAAAAAGCTCTTAGCCTAACTCCGCTCTCAGAGTAAAGCTTTCCAGAAGGATCATGCTCCAATGGAGTGCCTCTGATACCTCATTTCTCTtaattcatttcctttttttatttctgttttcacTTGGCATTGAAATAATCTGCAAACGGTTCCAGTGTAGAATATGGAAAATGATTAGATGATTTCGTACTGATCTGCAGTATTTCATTTCAATACATTTCTTTTACCTGTTTGAAGCATATCATTCTAATGATGATCCAAAATGAAGCACTTGTCGTCATGAGCAtatgcaaaaatgtattttaaaatatttttgtaattcgtgtcactgtattttatttattttaatagttccGGGCTTTTAACGAAAGCTCCACATTCTTACatgttaactgtgtgtgtgttaaaggtgTATGTGAGAGGAAGGTTTGTTCTTTTAAGCTTTGTACTCGAATTGTATCCATCTGTCCAATccttcagtttagtttagtataaACAGAAGGGTCCAAACTTGGTATTGGTATGTTTATATCCTGGTTTTAGCCGCTGTGGTATGTCTGCTTTGCCTCTAGTCTGCAAACCAGAGGCTTTGAGAAGCACACTGTGTTAATTGTGCTAGTTTTGTGTAGtgcaagaatttgatcagatgaAAATGAGGACCATGcacacactttataatactttaCCACAGTACCAAAGTCACTAGTCATGTTCagtttcttcatcttcttcctgATTTGACTGTTACCTTAATTTGTATTCCTACTAATAAGTAattcttgagaaaaaaaaaatatccttgCAGTTTCATACTGGTTAGTATACCACCATCCATATGTTGACATGAATAggaacaatattttattactgtattatcaGTAAGTCTCTGCTTAAGCAGTACTCTTTGCTCTAGCCTGCAGTAGTTCATACTGGGCCTAAAACTGTGGAACTAGTGCAAACATCTTTGAGCTGTAGTTAGACTGAAGATACAACTTTAACACTTTCAGGTGTACCACCACCAAATATCTGAAAAAGAATTTGTTGAAATCTAAACATCTGAAAAAAAGATCTGTATGAGAATATGTATCAGTATGAATGCTTTAATGAATGCTGTTTACAGTAATTTCTCTCTAAtgccttctaaataatacaaagCCTGTTTGCTTGCCTATATTAATGTATGAGAAGCATGTGTTCAGCTAGTTTTCTAGCTCATCAGTAGACCTAAGCCGCCATCTTCTTATTTATGTTGTCAGTTTCCCAGAGAaggattaaccctggttttggactacacagcatttttaaattgaaattatCCATTGatcagaaaatatattatatgactATACTATATGTCTGTATAGCCTTAATTTCTGTCTAGAAACTGAACAGACCAATTCTTGAAGTGAATGCATACTTTTGTGTAATTTAGTTTGTCCTTATTTATTGATCTTTTCCAATGTTCCAAAGTTAAGTATTTTGTGAATACCAAATGTGAAATCAATTAAATGTTGCACAACCAAAAATTTAAAACTCAAGATCTACAAAATGTTAAGATGTATCAGTAAAGATTTGCAATTATGAATGGAAACTAATACAAAGCAACCTAGTTTAATAGACAATGCTTATTTAACAGTATTTGGCTCTGTTAATGCTCTTATGATTGGTCCCTTTTCTCAATGACTGAATGTCTACGTTATCTTCACCTTCATGATGACACTGGCTTGATCTGACCCCATTATTCATATCTCAAACATACTGAGAAGGGACCATGTGAGTATTGGTTTGGGTCGAGTGGGTGAAGATATGCTTTggatatttatttgtgtttatagtgtctgtttaataatattttgttttgctgtcTGAATGAaatgttttgccatttttgtttctgtttttcataTAATCCATGTGTCTTGCCAGCAGGCATTCAATCCCCAATAAAATAGGAAAGCAAAA
>XM_022679552.1
GCGGCTGACGAGTGGACCGTAAGGCGGAAACGGGAGAAAGGCCGTATTGTTGAAGCGGTCGGTtagttagaaagggcggaagaGCCACCCGGGACCGGGTTTAGTTTGCTAGATTAGCCAGCTGACAGTCTGCGGAGCTGAGAGCCGGACGGGGCGGTGCGGAAGTTCTGCGCAGCTAAAGTGAGGAAGGGGTCCCCGCTTCTCGTAAGAACGTAAGCCGGGGGAGGGTAGTATGCAGGCGGTCCACGGTCTGGTAAGAAGCGCCGGTGATGGAGCTCCGAGCGCTAGTACCGCGTCTAAATGCGGTGCAAGATGCGGCGAAGAGGAGCCGGAGGAGCTGAACCTGAGGGTGTCCGCTCTCCGCGAGGGTAACGGGGACGAGGACTCGGAGGCAGAGTCGTACCGAGACGGACGGACCGGTGAAGTGGACCGCGAGACCCGGGCCCGGGCTTTCGCCTGGTGCCGAGACTTTCTCTCCGGGTCGTGGAAAAGTATCGCAGAGGCGGACTTTCAGATCAGCATAGTGAGTGGAGGACTCAGCAATCTGCTCTACAAATGTAGTTTGCCTGATCACATTAAGCCGGTTGGGGTGGAGCCCTCACGAGTGCTGCTCCGTATCTATGGAGCCATTTTACAGgaaGTGGAATCCTTGGTGTCTGAGAGCGTGATGTTTGCCATTCTAGCGGAGCGAAAGCTGGGTCCTCGTCTCTACGGCATTTTCCCAGAGGGCCGTCTGGAGCAGTATCTTCCTAGTAAGCGATTGCACACGGAGCACCTGCAGGTACCAGACATCTCCGCTGAAATAGCCTGTAAGATGGCACGCTTCCACCGCATGGTCATGCCCGTCAATAAGGAACCAAGATGGCTCTTTGCAACTATCGACAAgtacatgaaaaaaataatgaatactaCATTTGAACGTGAGGCTCACATCAAGAAGTTCAAGAAGCTGATGAAGTATGACCTTCCTGCTGAGCTagcaagtctgagagcaCTGCTGGCAGCGACTCCTTCACCCGTGGTGTTCTGTCACAATGACGTTCAGGAAGGTGAGTGTATATACACTCACTCACCCTTATGGAACATCTTGATGCTGGATGGCCGAGACCGGAACTCATCCGATAAGCTGATGCTCATAGACTTTGAGTACAGCAGCTACAATTACAGGGGTTTTGATTTTGGGAATCATTTCTGTGAGTGGGTGTATGACTACACTCATGATCAGTGGCCCTTTTTTAAGGCGAACCTGGACAACTATCCAAACAGGCAACAGCAGCTGCACTTCATCAGAAACTACTTGTCAGAATGTGAAGATAATGTACCTGAAGACCAAGCCAAGATAGAGGAGGATATTATTATTGAGGCAAACAGGTATGCCCTTGCTTCTCATTTCCTTTGGGGTCTGTGGTCCATTGTTCAAGCCAGAATCTCCAAAATTGAATTTGGATACATGGATTACGCCCAGCACAGGTTTGACTCCTACTTCAAGCAGAAAAAGCTCTTAGCCTAACTCCGCTCTCAGAGTAAAGCTTTCCAGAAGGATCATGCTCCAATGGAGTGCCTCTGATACCTCATTTCTCTtaattcatttcctttttttatttctgttttcacTTGGCATTGAAATAATCTGCAAACGGTTCCAGTGTAGAATATGGAAAATGATTAGATGATTTCGTACTGATCTGCAGTATTTCATTTCAATACATTTCTTTTACCTGTTTGAAGCATATCATTCTAATGATGATCCAAAATGAAGCACTTGTCGTCATGAGCAtatgcaaaaatgtattttaaaatatttttgtaattcgtgtcactgtattttatttattttaatagttccGGGCTTTTAACGAAAGCTCCACATTCTTACatgttaactgtgtgtgtgttaaaggtgTATGTGAGAGGAAGGTTTGTTCTTTTAAGCTTTGTACTCGAATTGTATCCATCTGTCCAATccttcagtttagtttagtataaACAGAAGGGTCCAAACTTGGTATTGGTATGTTTATATCCTGGTTTTAGCCGCTGTGGTATGTCTGCTTTGCCTCTAGTCTGCAAACCAGAGGCTTTGAGAAGCACACTGTGTTAATTGTGCTAGTTTTGTGTAGtgcaagaatttgatcagatgaAAATGAGGACCATGcacacactttataatactttaCCACAGTACCAAAGTCACTAGTCATGTTCagtttcttcatcttcttcctgATTTGACTGTTACCTTAATTTGTATTCCTACTAATAAGTAattcttgagaaaaaaaaaatatccttgCAGTTTCATACTGGTTAGTATACCACCATCCATATGTTGACATGAATAggaacaatattttattactgtattatcaGTAAGTCTCTGCTTAAGCAGTACTCTTTGCTCTAGCCTGCAGTAGTTCATACTGGGCCTAAAACTGTGGAACTAGTGCAAACATCTTTGAGCTGTAGTTAGACTGAAGATACAACTTTAACACTTTCAGGTGTACCACCACCAAATATCTGAAAAAGAATTTGTTGAAATCTAAACATCTGAAAAAAAGATCTGTATGAGAATATGTATCAGTATGAATGCTTTAATGAATGCTGTTTACAGTAATTTCTCTCTAAtgccttctaaataatacaaagCCTGTTTGCTTGCCTATATTAATGTATGAGAAGCATGTGTTCAGCTAGTTTTCTAGCTCATCAGTAGACCTAAGCCGCCATCTTCTTATTTATGTTGTCAGTTTCCCAGAGAaggattaaccctggttttggactacacagcatttttaaattgaaattatCCATTGatcagaaaatatattatatgactATACTATATGTCTGTATAGCCTTAATTTCTGTCTAGAAACTGAACAGACCAATTCTTGAAGTGAATGCATACTTTTGTGTAATTTAGTTTGTCCTTATTTATTGATCTTTTCCAATGTTCCAAAGTTAAGTATTTTGTGAATACCAAATGTGAAATCAATTAAATGTTGCACAACCAAAAATTTAAAACTCAAGATCTACAAAATGTTAAGATGTATCAGTAAAGATTTGCAATTATGAATGGAAACTAATACAAAGCAACCTAGTTTAATAGACAATGCTTATTTAACAGTATTTGGCTCTGTTAATGCTCTTATGATTGGTCCCTTTTCTCAATGACTGAATGTCTACGTTATCTTCACCTTCATGATGACACTGGCTTGATCTGACCCCATTATTCATATCTCAAACATACTGAGAAGGGACCATGTGAGTATTGGTTTGGGTCGAGTGGGTGAAGATATGCTTTggatatttatttgtgtttatagtgtctgtttaataatattttgttttgctgtcTGAATGAaatgttttgccatttttgtttctgtttttcataTAATCCATGTGTCTTGCCAGCAGGCATTCAATCCCCAATAAAATAGGAAAGCAAAA

Function

symbol description
chkb Predicted to enable kinase activity. Predicted to act upstream of or within phosphorylation. Human ortholog(s) of this gene implicated in intellectual disability; megaconial type congenital muscular dystrophy; muscular dystrophy; narcolepsy; and recurrent hypersomnia. Orthologous to human CHKB (choline kinase beta).

NR:

description
choline/ethanolamine kinase

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function

KEGG:

id description
K14156 CHK; choline/ethanolamine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007233841.3 False 3422 mRNA 0.42 12 8494841 8507495
XM_022679552.1 True 3453 mRNA 0.42 12 8494840 8507495

Neighbor

gene id symbol gene type direction distance location
pgc LOC108440932,LOC108441008 coding upstream 20369 8466873 ~ 8474471 (+)
arsa arsa,LOC100304877,LOC102794702 coding upstream 62787 8423666 ~ 8432053 (+)
LOC103028908 NA coding upstream 193060 8291162 ~ 8301780 (+)
rabl2b rabl2b,rabl2,rabl2a,LOC107662875,LOC107600941 coding upstream 613880 7875024 ~ 7880960 (+)
odf3b NA coding upstream 628262 7862072 ~ 7866578 (+)
LOC103026556 LOC108264446 coding downstream 909 8508404 ~ 8513431 (+)
cpt1b cpt1b,LOC100329197,LOC107599889,LOC107671150,LOC107686536 coding downstream 12523 8520018 ~ 8533167 (+)
prpf18 prpf18,LOC107671164,LOC107719961 coding downstream 47693 8555188 ~ 8565498 (+)
LOC111194761 NA coding downstream 312607 8820102 ~ 8826458 (+)
LOC103043520 NA coding downstream 323934 8831429 ~ 8836613 (+)
G157027 NA non-coding upstream 56571 8432614 ~ 8438269 (+)
G157022 NA non-coding upstream 133090 8361520 ~ 8361750 (+)
G157019 NA non-coding upstream 137763 8356218 ~ 8357077 (+)
G156917 NA non-coding upstream 634200 7846615 ~ 7860640 (+)
LOC107197493 NA non-coding upstream 644962 7846483 ~ 7849878 (+)
G157052 NA non-coding downstream 58934 8566429 ~ 8567668 (+)
G157054 NA non-coding downstream 60749 8568244 ~ 8568463 (+)
G157064 frmd4a non-coding downstream 96094 8603589 ~ 8608021 (+)
G157069 NA non-coding downstream 173314 8680809 ~ 8683103 (+)
G157210 NA non-coding downstream 384595 8892090 ~ 8894941 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other upstream 888172 7600567 ~ 7606668 (+)
LOC111194759 NA other upstream 1063272 7372376 ~ 7431568 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other upstream 1323215 7093507 ~ 7171625 (+)
G156188 NA other upstream 3337440 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 3857550 4575668 ~ 4637290 (+)
G157055 NA other downstream 62435 8569930 ~ 8570877 (+)
G157383 NA other downstream 1433334 9940829 ~ 9941805 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other downstream 2065248 10572743 ~ 10591523 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other downstream 2193293 10700788 ~ 10713982 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other downstream 2244204 10751699 ~ 10754698 (+)

Expression


Co-expression Network