cpt1b (cpt1b,LOC100329197,LOC107599889,LOC107671150,LOC107686536)


Basic Information

Item Value
gene id cpt1b
gene name cpt1b,LOC100329197,LOC107599889,LOC107671150,LOC107686536
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 8520018 ~ 8533167 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007233844.3
AGACGTGGGAATACTTCCTAACATGCACTCAGAAATCCTGCAGCGTCTTCCTCCTGTACTCTAGCAGCAAGATTTAATGTTGATATTTGGGCCCTAAGCCTACAGCAGGGCCAGAGAGGTGTCCAGttacaaacacaccacacacacacacacacagactgtggtggagaggaagagagagaaagagtgaaacaCACTGAAGAAGAAAGGCACAGAGGAAAGGTAGAGGCAGAGAAGGAGCAATATTTCCAGCCTCTGAAGGAGAGGGGACAGCAGGGTCACACTGATCTCCACAGCTGTCTACTGCACCAGGAGTTCCCACTGACCCTGAGAGGAGAGCAGCCTGGACGTGTTCACTTATTCTGGGTCACTGCATCAACTTAACATCAGActgctgtaaaaagaaaaaaccaAGCGTGTGCGATGGCAGAGGCCCACCAGGCGGTGGCCTTCCAGTTCACCGTCACCTCGGAGGGCATCAATCTTCAGTTTCGCCGTGAAGTGCTGAAACACATCTACCTTTCTGGAGTAACATCATGGAGAAAACGtgtaattcagttaaaaaATGGCATCCTAACAGGGGTCTATCCTGCGAGTCCATCCAGCTGGCTCTTCATGGTCATTGCAATAATGAGCTCCATGTATGCCCGAGTAGACCCCTCCATGGGAATGATTGACAGCATCAAGAAAGTTTTACCTGTGAGTGAGTATCTCACAGTCCAGTCTCAGATGGTGTTAAGTGCGATCCTGTTTGCCACAGGGTTGTGGTTGTCTCTGATTCTGCTGATGCGCTACACTCTGAAATCCCTGCTCTCCTATCACGGCTGGATCTTTGAACCGCATGGAAAAATGAGCACGTCCACCAGACTCTGGATGAGGCTGGTAAAGATGTTTTCAGGACGCCGTCCTTTGCTCTACAGTTTCCAGGCTGCTTTACCCAGACTTCCAGTGCCTAATATTGATGACACCATCTGCAGGtaTCTTGAATCAGTGCGACCTCTGCTGGATGATGACCAATACAAACAGATGGAAACTCTGGCATATGAGTTTAAAAAGGACCAAGCCcctaaattacaaaaatacctTCAGCTGAAATCCTGGTGGTCCAATAACTATGTCAGCGACTGGTGGGaggaatatatttatatgagaAGCAGAGGGCCTATCATGGTGAACAGCAACTTCTACATCATGGACCTGCTGTATGTGTTCCCCACCCACAGACAGGCTGCCCGTGCAGGCAACGTGGTCCACGCCATCCTGCAGTACCGCCGTAAGCTAGAGCGAGGAGAGCATGCCCcgATGAGAGCTCTGGGGGTTGTGCCTATGTGCTCCTATCAGTATGAAAGAATGTTCAACACCACTCGAATCCCCGGTATTGAGACAGacacCGTCCAGCATCTGAGGAACAGGAAGCACCTGGTTGTGTACCACAAAGGATGCTTCTTTAAGGTCTGGCTGTACTACGGCGGCCGCCATCTCCTGCCTTCTGAACTGGAGCAGCAGTTTCAGTACATTCTTAACAACAGCTCAGAGCCTCAGCCTGGAGAACTGAAACTGGCCGCTCTGACCGCCGGGAACAGAGTTCCCTGGGCCAAAGCAAGGCAGAAGTACTTCAGTGACGGGGTGAACAAGGCGTCTCTGAATGCCATAGAAACGGCCGCCTTTTTCCTGACCTTGGATGATGAGGAGCACGGATATGACCCTGAGAGGCCTGGGTCGATGGATCTCTATGCCAAATCTCTGCTGCATGGAAAATGCTATGACAGgTGGTTTGATAAATCCTTCACTCTAGTCGTGTATAAGAACGGCAAAATTGGGGTGAACATTGAGCATTCGTGGGCAGATGCCCCCATCGTTGGACATATGTTAGAGGACGTTCTTGCCACAGACTACTTCCGCTTAGGATACACAGAGGAGGGGCACTGCAAAGGAGACATCAATAAAGGCTTGGCTTTTCCTACCAGGCTACAGTGGGACATTCCAAAACCGTGTCAGGATATTATTGAAGGCTCTTACCGCATAGCGAAGGATCTAGCTGACGATGTCGATTTCCACGGCTATGTGTTTGAAGAATTTGGGAAAGGCCAGATCAAGAAAAGCAAAACAAGCCCTGATGCTTTCATTCAGCTGGCACTGCAGCTCGCTCACTTCAGGGACAAAGGGGAGTTCTGTCTTACATATGAGTCCTCGATGACCCGTATGTTCAGAGAGGGACGGACTGAGACAGTTCGATCCTGTACCATTGAATCTACAGCCTTTGTACGAGCCATGGTGGACGAGACCTGCACGaaagagaaaaggctGGCTTTGTTTCGGatagcagcagataaacaccaGAACATGTATCGTCTGGCCATGACGGGAGATGGGATCGACCGCCATCTCTTCTGCCTCTACATCGTCTCCAAACTAGTCGATGTTGAATCCCCCTTCCTCAAACAGGTTCTTTCAGAGCCTTGGCATCTTTCCACGAGTCAGACGCCCCAGCAGCAGCTCAACCTTGTTGACATCCAGAAGTTCCCTAAATATGTCGGAGCGGGAGGAGGCTTTGGGCCTGTTGCTGATGATGGTTATGGGGTTTCCTATATTATTATTGGAGAGAATCTCATCACATTCCATATCTCCAGCAAGTTCTCATGCCCAGAAACGGACTCACATCGCTTCGGCCAGAACATCAGACAAGCCATGCTGGACATCAGAGCTCTGTTCGACCAGAAGCAGAAGACAAATTAAGTCTCAGCAGTGTAAATTAAGACATCacaacacacaaatgcacagaTATGGCTGATCATTTCAGCAGCTAAGCGCTTAATGGACAATCACAAATCACACAAAGTCATCACCAAGAGAAcatgtaaaatactgtacagtTATTATAGACATAAATCAGTTAAAATCACTGGACTTTTAGTTATGAAACAACTGaaactaaaaaacattattaagaaATGTTGTAAATCTGAAAATTGTTAAGAGAAATGACTacatttgtaaagttgtaatGTACTTGTAcacaatgtaatataattagAGAAACAGTATACTGTGTACAATTGTAAATACTGACTATATGTTTTAAGCACGTTTGCAGGTTATATTAGTTGGGGCATTGGTTGGGTGTCCAGCTATTTTATTcatgcatatttcattaaattatttgatttga

Function

symbol description
cpt1b Predicted to enable carnitine O-palmitoyltransferase activity. Acts upstream of or within response to (R)-carnitine and response to bacterium. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Is expressed in female organism and liver. Orthologous to human CPT1B (carnitine palmitoyltransferase 1B).

NR:

description
PREDICTED: carnitine O-palmitoyltransferase 1, muscle isoform isoform X2

GO: NA

KEGG:

id description
K08765 CPT1A; carnitine O-palmitoyltransferase 1, liver isoform

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007233844.3 True 3169 mRNA 0.47 20 8520018 8533167

Neighbor

gene id symbol gene type direction distance location
LOC103026556 LOC108264446 coding upstream 6587 8508404 ~ 8513431 (+)
chkb chkb,LOC107577700 coding upstream 12523 8494840 ~ 8507495 (+)
pgc LOC108440932,LOC108441008 coding upstream 45547 8466873 ~ 8474471 (+)
arsa arsa,LOC100304877,LOC102794702 coding upstream 87965 8423666 ~ 8432053 (+)
LOC103028908 NA coding upstream 218238 8291162 ~ 8301780 (+)
prpf18 prpf18,LOC107671164,LOC107719961 coding downstream 22021 8555188 ~ 8565498 (+)
LOC111194761 NA coding downstream 286935 8820102 ~ 8826458 (+)
LOC103043520 NA coding downstream 298262 8831429 ~ 8836613 (+)
LOC103030146 impdh1,impdh1a,LOC108442450,LOC107559456,LOC107665545,LOC107710381,LOC107599814,LOC106561215,LOC103030146 coding downstream 311809 8844976 ~ 8871398 (+)
LOC103031618 NA coding downstream 364410 8897577 ~ 8902959 (+)
G157027 NA non-coding upstream 81749 8432614 ~ 8438269 (+)
G157022 NA non-coding upstream 158268 8361520 ~ 8361750 (+)
G157019 NA non-coding upstream 162941 8356218 ~ 8357077 (+)
G156917 NA non-coding upstream 659378 7846615 ~ 7860640 (+)
LOC107197493 NA non-coding upstream 670140 7846483 ~ 7849878 (+)
G157052 NA non-coding downstream 33262 8566429 ~ 8567668 (+)
G157054 NA non-coding downstream 35077 8568244 ~ 8568463 (+)
G157064 frmd4a non-coding downstream 70422 8603589 ~ 8608021 (+)
G157069 NA non-coding downstream 147642 8680809 ~ 8683103 (+)
G157210 NA non-coding downstream 358923 8892090 ~ 8894941 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other upstream 913350 7600567 ~ 7606668 (+)
LOC111194759 NA other upstream 1088450 7372376 ~ 7431568 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other upstream 1348393 7093507 ~ 7171625 (+)
G156188 NA other upstream 3362618 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 3882728 4575668 ~ 4637290 (+)
G157055 NA other downstream 36763 8569930 ~ 8570877 (+)
G157383 NA other downstream 1407662 9940829 ~ 9941805 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other downstream 2039576 10572743 ~ 10591523 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other downstream 2167621 10700788 ~ 10713982 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other downstream 2218532 10751699 ~ 10754698 (+)

Expression


Co-expression Network