arsa (arsa,LOC100304877,LOC102794702)


Basic Information

Item Value
gene id arsa
gene name arsa,LOC100304877,LOC102794702
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 8423666 ~ 8432053 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007233848.3
TGTAAATAGGGAAGTAATTTCTATTCGCTTTTATTTCGGATTATTAGTGCTATTGAGATGATTCAATGTGTGTATAGGGAATTTATTCATCTGTGGAGTTAGATTAGCTAGTTTAGTGCAGGGAGGCGGGTTACTCAGACCCgcagcagcactgtgtgtgtgtgtgtttatgaggaGGTCATGAGGATCTGTGTATTATAAccttatgatgatgatgatgatttaatgaacttcagcagcagcaggagcaggaagTTCTGCAGGCAGGAGATGGGTCAGTGGACGGGGCGGTGGGTGACCGCGGCTCTGCTGGCGCTGCTCTGCCCGGGCTGTGGGGCTGCAGATCTGCCGAACTTCGTGCTGCTGTTCGCTGATGATCTGGGTTATGGAGATCTGGGGTTTGGGGGGCACCCCTCCTCACTCACCCCCAACCTGGACCGACTGGCCGCGCGCGGACTGCGCTTCACCGACTTCTACGCCACGAGCCCGGTGTGCAGCCCCTCCAGAGCTTCTCTGTTGACGGGTCGCTATCAGACACGCTCTGGGATCTACCCTGGGGTCCTGTACCCGGGCTCCAAGGGTGGGTTACCGTTGAATGAGACCACCATTGCAGAAGTCTTGAAGCCACTGGGCTACACCACAGCCATGATGGGGAAATGGCACCTGGGCCTTGGGGCAAATGGTACCTACCTGCCCACCCGACAAGGCTTTGACCACTACCTTGGCATCCCGTACTCGCATGATATGGGACCCTGTCATAATCTGACGTGCTTCCCTCCTGATGTGAAGTGTTTTGGGTTCTGTGATCGAGGTGTGGTAACAGTGCCCTTGATGTCTGGGGAAAGCATCCTGCAGCAGCCTGTAGATTTCATCAACCTGGAGAATTCCTACAGTGACTTTGCCACTAAGTTCATCCGTACAGCAGCTCAGAACAAGCAGCCCTTTTTTCTCTATTATCCCTCTCACCACACTCACTACCCTCAGTTTGCGGGGTGGAAGGCGGTGGGCAGGTCTCTCAGAGGGCCGTTTGGAGACTCCCTGCTGGAGTTCGACTCCACTGTAGGAAACATTCTGCAGACTCTAGAGGACACTGGCGTCCTTAACAACACCCTCATCTTCTTTACCGCTGATAATGGGCCAGAGCTTATGCGCATGTCTCATGGAGGAAATTCTGGTTTGCTAAAGTGTGGTAAAGGCACTACATATGAAGGAGGAATGAGAGAACCTGCCATTGCATTCTGGCCTGGAGTCATCCAGCCTGGTGTCACTCACAGTCTATCCAGCACTCTGGACGTCCTGCCAACTTTTGCCAAACTGTCTGGAGCCTCATTACCCAAAGTGCATCTAGATGGTGTGGACATGACTGATATATTGTTCAACCATGGACTAGGAAACAGGGATGCCATGTTTTACTACCCTACTGACCCCAGTGAGAAGTATAGTGTGTTTGCAGTGAGACTGGGGAAATACAAAGCTCACTATTACACACGGGGAGCAGCACACAGTGACACCACTCCAGACCAGGACTGTCACATGATCTCTACCCTGAAGCAGCATGATCCTCCTCTGTTGTTCGACCTGGAGTCAGACCCTTCTGAGAATTATAACTTGAGCCCTAAGGATCACCCAGAGTTGGTTGACGTGCTGCAGAAAATCCAGGACCTGAAGGACCAGTTTGAGGCCTCCATGGTGTTTGGGGAGAGTGAGAGTAAAGGAACAGACCCTGCACTGGAGCCCTGCTGTACCCCACAGTGCTCTCCCAAACCCGAGTGCTGCCAGTGTGGAAGTCAGGGgtactgatcatgttttgctttGTGATTaacattacagtattttaatctttttttaatcttcatGCTGGACACTGTGAAAAATGTCTGCTGTGGTCTTTGATCAGCACTTAATGTCCTCAGGATTTCTGTACAAGGGAGTGAGATCAGAGACAATCTCACTTGGGAAGGCGAGGCACATTCTAAcaccatttttgttttgttaaattatgttaaaatcatttgatcatattttaatattgtttatacaAGTAACTCATACAATACTGgtataatagaataaaataataaaaaaaagtttatttccaGAACGATCCATTCCAAACAATTCAGCAGTAAGCAAGTTGGGTGCGAATGTTACAACCCCTTAGTGGGGGTTAATTGAAACAAAtggcttttgttttttgtggctAATGTTCcctaaaaaatcaattaaattgacttttaacatttaattcagtatcactaatttaatgtgtttttaatggtgCCTTAACCCACATTCTTTGATGTCTCGCTCTCCTTTATATTAAGTAATGCAGTTGCTGCCTCATACACATTTTGTCTTGAATGCTCATTGAAAGCTATGCACTGGTGCaatctgtatggtgttgtatggtaattaatttctaaactttattttctaacAAGGGAAATACTAAACTGGTACAATCA

Function

symbol description
arsa Predicted to enable arylsulfatase activity. Human ortholog(s) of this gene implicated in metachromatic leukodystrophy. Orthologous to human ARSA (arylsulfatase A).

NR:

description
arylsulfatase A

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008484 sulfuric ester hydrolase activity molecular_function

KEGG:

id description
K01134 ARSA; arylsulfatase A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007233848.3 True 2465 mRNA 0.47 9 8423666 8432053

Neighbor

gene id symbol gene type direction distance location
LOC103028908 NA coding upstream 121886 8291162 ~ 8301780 (+)
rabl2b rabl2b,rabl2,rabl2a,LOC107662875,LOC107600941 coding upstream 542706 7875024 ~ 7880960 (+)
odf3b NA coding upstream 557088 7862072 ~ 7866578 (+)
LOC103032733 LOC108439982 coding upstream 563156 7851925 ~ 7860510 (+)
LOC103033491 arf5,zgc:77650,LOC103033491,LOC108439765,LOC108439842,LOC107599983,LOC107599973,LOC105912562 coding upstream 587940 7830102 ~ 7835726 (+)
pgc LOC108440932,LOC108441008 coding downstream 34820 8466873 ~ 8474471 (+)
chkb chkb,LOC107577700 coding downstream 62787 8494840 ~ 8507495 (+)
LOC103026556 LOC108264446 coding downstream 76351 8508404 ~ 8513431 (+)
cpt1b cpt1b,LOC100329197,LOC107599889,LOC107671150,LOC107686536 coding downstream 87965 8520018 ~ 8533167 (+)
prpf18 prpf18,LOC107671164,LOC107719961 coding downstream 123135 8555188 ~ 8565498 (+)
G157022 NA non-coding upstream 61916 8361520 ~ 8361750 (+)
G157019 NA non-coding upstream 66589 8356218 ~ 8357077 (+)
G156916 NA non-coding upstream 485636 7836755 ~ 7938030 (+)
G156917 NA non-coding upstream 563026 7846615 ~ 7860640 (+)
LOC107197493 NA non-coding upstream 573788 7846483 ~ 7849878 (+)
G157027 NA non-coding downstream 561 8432614 ~ 8438269 (+)
G157052 NA non-coding downstream 134376 8566429 ~ 8567668 (+)
G157054 NA non-coding downstream 136191 8568244 ~ 8568463 (+)
G157064 frmd4a non-coding downstream 171536 8603589 ~ 8608021 (+)
G157069 NA non-coding downstream 248756 8680809 ~ 8683103 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other upstream 816998 7600567 ~ 7606668 (+)
LOC111194759 NA other upstream 992098 7372376 ~ 7431568 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other upstream 1252041 7093507 ~ 7171625 (+)
G156188 NA other upstream 3266266 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 3786376 4575668 ~ 4637290 (+)
G157055 NA other downstream 137877 8569930 ~ 8570877 (+)
G157383 NA other downstream 1508776 9940829 ~ 9941805 (+)
gan gan,LOC107738389,LOC107684660,LOC107722487,LOC107666225 other downstream 2140690 10572743 ~ 10591523 (+)
klhl36 klhl36,LOC107684687,LOC107722460,LOC107666227 other downstream 2268735 10700788 ~ 10713982 (+)
LOC103038570 cs012,zgc:112052,LOC103038570,LOC107666220,LOC108424746,LOC107587048,LOC107683025,LOC103371715 other downstream 2319646 10751699 ~ 10754698 (+)

Expression


Co-expression Network