CI01000012_11995593_12005292 (CGAT2, CSGALNACT2)


Basic Information

Item Value
gene id CI01000012_11995593_12005292
gene name CGAT2, CSGALNACT2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 11995593 ~ 12005352 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_11995593_12005292.mRNA
ATGCCCAGACGGGGGCTTCCTCTGCAGGGGCGGGCGCGCTGGCTTCTCCTGGGTATATTTTTGCTCCTGGTGCTGCTGCTCTTTGCTTACCTGCTGGAATGCACGCCCCCTGCAGATGTGAGTCAGGTGCTGCCTGGCCTGGGCGGAGATCCGTATGGGAAGGAGTATTACCAGGCCCTCCTGCAGGAGCAGGAAGAGCGGCATCTCAGCCGAGCGGCCAGCCTCAAGAGGCAGATCGCACAGCTCAAACAAGAACTCCAAGAGATGAGCGAGAAACTGAGAATACTTCAAGAAAAAAAGGAGGGTCCCGGGCCACAGAGCCTGATTGATGGCAGAGATCAAGAGCCGAGTGACCTCTTGGAGTACCTGCACTCACAAATCGACAAAGCAGAGGTGAATACAGGAGCGAGGCTGCCAAGCGAGTACGCGCTTGTGCCCTTTGAGAGCTTCACCACCACAAAGGTGTACCAGCTGGAGATGGGCCTGACGCGCCACCCCGAGGAGAAGCCTGTGCGGAAGGACCGGAGGGATGAGTTGGTGGAGGTGATAGAAGCGGGTTTGGATATTATTAATAACCCAGAAGATGATGACGGACAGGAGGACAACATCCCCATGCAGAGGCAGACGTTCACAGAAAGCCATTTTTTTGAGGGACTCTACAGGACCGAGAGGGACAAAGGCACACTGTATGAGCTCTACTTCGCTAAAGAGAATTCCCATGAGTACCGTCACGTCACCCTCTTCCGTCCATTTGGGCCCCTCATGAAAGTGAGGAGCACGTCTGTAGACGCCGCCAGCACCATCATTAACATCATAGTACCACTGTCAGGCCGCACTGAAGCCTTTGTTCAGTTCTTGCACAACTTCAGGGAGGTTTGTATACAGCAGGACAAGCGGGTGCATCTCACAGTGGTGTATTTTGGTCAGATGGGCTTGCAGGAGGTGAAGGCGTCTTTGAAGAAAATGTCCAGCGAGGAGAACTTCAGTAACTACACTCTGATCCCTGTGGATGAGGAGTTTTCACGTGGCCGTGGTCTGGACATTGGAGCTCATGCGTGGGAGAAAGGGGGGGACGTGTTGATGTTCTTCTGTGACGTTGACATCTACTTCACCCTGGAATTTCTTAGTACTTGTCGGCTTAATACAGCTCCAGCTATAGTTTATGGAAATCTTGAGTTTCCACCCCCAATTGAGAATCAGCTGATTCATAAAAAAGATGCCGGATTCTGGAGGGATTTTGGATTTGGCATGACTTGTCAGTATCGCTCTGACTTTCTAAGCATTGGAGGATTTGATCTGGAAGTGAAAGGCTGGGGTGTAGAAGATGTGCACTTGTACAGGAAGTACCTACGAAGTGATCAGATTGTGATCCGCACTCCGGTATCAGGCCTCTTCCACCTGTGGCATGAGAAGCTGTGCGCAGACGAGCTGACCCCAGAACAGTACCGCATGTGCATCCAGTCCAAGGCAATGAATGAGGCGTCACACTCTCACCTGGGCATGCTTGTGTTCAGGGAGGAGATCGAGACTCACCTTCGAAAGCAGGCCTACAAAACTCAGAGCAGACCAGCAGAATGAATCAACAATGCAGCAAGGAGCACAACTTTGTTGATAACAGCAATGAAGAAATGGGTCAAA

Function

symbol description
csgalnact2 Predicted to enable glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity. Acts upstream of or within chondroitin sulfate proteoglycan biosynthetic process and heparan sulfate proteoglycan biosynthetic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cartilage element; nervous system; notochord; pronephric duct; and tail bud. Orthologous to human CSGALNACT2 (chondroitin sulfate N-acetylgalactosaminyltransferase 2).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K00746 CSGALNACT1_2; chondroitin sulfate N-acetylgalactosaminyltransferase 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_11995593_12005292.mRNA True 1638 mRNA 0.52 7 11995593 12005352

Neighbor

gene id symbol gene type direction distance location
CI01000012_11981083_11993407 RET coding upstream 1500 11981083 ~ 11994093 (+)
CI01000012_11932267_11962143 NA coding upstream 33385 11932267 ~ 11962208 (+)
CI01000012_11913513_11921468 SGPL1 coding upstream 73658 11913513 ~ 11921935 (+)
CI01000012_11897443_11903607 PDLIM1 coding upstream 91986 11897443 ~ 11903607 (+)
CI01000012_11874504_11884601 REL coding upstream 110301 11874504 ~ 11885292 (+)
CI01000012_12016924_12024791 MCMBP coding downstream 11572 12016924 ~ 12025035 (+)
CI01000012_12054427_12060390 TIAL1 coding downstream 49075 12054427 ~ 12060390 (+)
CI01000012_12128962_12130578 ITPRIP coding downstream 123094 12128446 ~ 12132127 (+)
CI01000012_12159352_12162539 NA coding downstream 153296 12158648 ~ 12162839 (+)
CI01000012_12173747_12212480 VCLA, VCL coding downstream 168036 12173388 ~ 12213285 (+)
G76247 NA non-coding upstream 30284 11964524 ~ 11965309 (+)
G76198 NA non-coding upstream 70076 11920259 ~ 11925517 (+)
G76261 NA non-coding upstream 99394 11895999 ~ 11896199 (+)
G76181 NA non-coding upstream 153782 11840055 ~ 11841811 (+)
G76152 NA non-coding upstream 201375 11794011 ~ 11794218 (+)
G76212 NA non-coding downstream 20491 12025843 ~ 12029190 (+)
G76236 NA non-coding downstream 24938 12030290 ~ 12031920 (+)
G76281 NA non-coding downstream 28451 12033803 ~ 12034004 (+)
G76238 NA non-coding downstream 29163 12034515 ~ 12035608 (+)
G76245 NA non-coding downstream 30538 12035890 ~ 12036924 (+)
G75533 NA other upstream 849854 11144817 ~ 11145739 (+)
CI01000012_10223957_10235955 NA other upstream 1771306 10223697 ~ 10236276 (+)
G73578 NA other upstream 3627966 8366806 ~ 8367627 (+)
CI01000012_07806089_07811902 BEND3 other upstream 4187738 7805248 ~ 7811902 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 6071288 5922385 ~ 5929186 (+)
G76385 NA other downstream 625403 12630755 ~ 12675666 (+)
G76374 NA other downstream 740179 12745531 ~ 12749169 (+)
CI01000012_13029637_13033226 RGS17 other downstream 1010154 13029435 ~ 13038899 (+)
G76645 NA other downstream 1646507 13651859 ~ 13652234 (+)
G76656 NA other downstream 1698135 13703487 ~ 13739731 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006635 csgalnact2 coding NC_007124.7 CM002897.2 25569831 ~ 25581303 (-)
bowfin (Amia calva) AMCG00003216 csgalnact2,LOC106604550,LOC102795995 coding CM030139.1 CM030139.1 14808618 ~ 14826815 (+)