rnf7 (rnf7,LOC107557824,LOC107713281,LOC107692028)


Basic Information

Item Value
gene id rnf7
gene name rnf7,LOC107557824,LOC107713281,LOC107692028
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 22722720 ~ 22727446 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235619.3
TGTAGTTCTCTCTGTTTTCCCCCTTTAGCTGTGGATCACTGTGGTAATTTATCGCTGCTCGCTGATCCGGGATCAGCCCCGGTGCTCTGCGGCAGTGCTGGTCAGGCCGGGCTGGGTCTGAGCCCCTGATCCTGGGTCAGTGTTAGCGTTAGCGGGGCGGCCGGACGCTCTGCTGGAGTCGGCCATTTTGTAGCTGCCCTTTTCTGCCATGGCGGAGATGGATGACGGAGACGAGCCGGTTTTGGTGCACTCGATCAGCGGCTCCTCCGGGTCCGGCTCTGGGTCCAGCTCCAGATCAGCTGGGGACAAGATGTTCTCTCTAAAGAAGTGGAATGCGGTGGCCATGTGGAGTTGGGACGTGGAGTGCGATACCTGCGCCATCTGCCGGGTCCAGGTCATGGATGCGTGTCTGAGGTGCCAGGCAGAAAATAAACAAGAGGACTGTGTTGTTGTGTGGGGAGAGTGCAACCACTCTTTCCATAACTGCTGCATGTCTCTCTGGGTGAAGCAGAACAATCGATGCCCGCTATGCCAGCAGGACTGGGTTGTCCAAAGGATTGGCAAGTGAGGACCACGATAccaacccccacccccctcctGCTGGGTTCTCCGTCCACTCTGGGCCCTGCCTGGCTTTATGACGCAGGACTGAGAACACTACTTAGCTGCCCAGTGTGACACCAGTGTGCATGTTTGTGACTGTCGAGCAGAACCCATGAACTTTACCAGATCTCCAGATGACACTGGTACCTGCCCCTTCCATTTCCCTGCCTCCCAGTAAAAGGCACAAGACTGAAGGGCACTGTGGAGCGAAACTACGGTGTCTCTGACGGGACGGGAGTATGGATGAATATGtgctgtgaatgtgtgttttaatatatgttagaataaaaatgtaagcatTAAAACTTAAAGCCTa

Function

symbol description
rnf7 Predicted to enable cullin family protein binding activity and ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of Cul5-RING ubiquitin ligase complex. Predicted to be active in nucleus. Orthologous to human RNF7 (ring finger protein 7).

NR:

description
PREDICTED: RING-box protein 2

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10611 RBX2, ROC2, RNF7; RING-box protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235619.3 True 919 mRNA 0.55 3 22722720 22727446

Neighbor

gene id symbol gene type direction distance location
LOC103028656 LOC108264789,LOC108429874 coding upstream 330145 22302354 ~ 22392575 (+)
snrpa snrpa coding upstream 435079 22282694 ~ 22287641 (+)
itpkc itpkc,itpkcb,LOC107596863,LOC107758549 coding upstream 462649 22234292 ~ 22260071 (+)
LOC103027502 NA coding upstream 489665 22205157 ~ 22233055 (+)
LOC111194835 NA coding upstream 628467 22090563 ~ 22094253 (+)
LOC103026853 LOC108429884 coding downstream 1087 22728533 ~ 22736629 (+)
LOC103027133 fzd9,fzd9b,LOC107563503,LOC107713270,LOC107691950 coding downstream 86089 22813535 ~ 22816398 (+)
LOC103027426 LOC103027426 coding downstream 165026 22892472 ~ 22893301 (+)
LOC103030816 NA coding downstream 333129 23060575 ~ 23094876 (+)
LOC103026225 cntn5,LOC107691883 coding downstream 650423 23377869 ~ 23673136 (+)
G160115 NA non-coding upstream 960 22721208 ~ 22721760 (+)
G160106 NA non-coding upstream 49816 22670116 ~ 22672904 (+)
G160098 NA non-coding upstream 72654 22649831 ~ 22650066 (+)
G160096 NA non-coding upstream 73801 22648636 ~ 22648919 (+)
LOC111194779 NA non-coding upstream 99413 22622839 ~ 22623307 (+)
G160129 NA non-coding downstream 17911 22745357 ~ 22746298 (+)
G160144 NA non-coding downstream 119945 22847391 ~ 22847763 (+)
G160137 baz1b non-coding downstream 129646 22857092 ~ 22860616 (+)
G160142 selenot,selt1b,LOC108429894,LOC108264179,LOC107557827,LOC107710848,LOC107684611 non-coding downstream 167609 22895055 ~ 22899397 (+)
G160160 NA non-coding downstream 184113 22911559 ~ 22948189 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 569935 22147844 ~ 22152785 (+)
fam174b NA other upstream 1648147 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 1710926 21009302 ~ 21011794 (+)
G159728 NA other upstream 1985671 20736598 ~ 20737049 (+)
G159666 NA other upstream 2535801 20185516 ~ 20186919 (+)
G160134 NA other downstream 125966 22853412 ~ 22854081 (+)
G160306 NA other downstream 1391683 24119129 ~ 24119825 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 3596374 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 3889816 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 4177798 26905244 ~ 26907627 (+)

Expression


Co-expression Network