LOC103027426 (LOC103027426)


Basic Information

Item Value
gene id LOC103027426
gene name LOC103027426
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 22892472 ~ 22893301 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235622.2
TGAGGGCGTCCAAATACAGCGAGACGTTCCTGTCCAGCACAACCATGAAGGCTCTCATTCTCCTGGCCCTGTGCGCCGTGGCGTACGCCGCCCCCCTGGATGGTGACGATGACAAGATCGTCGGTGGCTACGAGTGCCAGAAGAACGGTGTGGCCTACCAGGTCTCCCTGAACGCCGGCTACCACTTCTGCGGCGGCTCCCTCATCAGCAGCCAGTGGGTGGTGTCTGCCGCCCATTGCTACAAGTCTCGCATCCAGGTGCGCCTGGGAGAGCACAACATCAACGTCAACGAGGGCACCGAGCAGTTCCTCAACTCCGCTGTGGTGGTCAAGCACCCTCGCTACAACGGCAACAACCTGGACAACGACATCATGCTCATCAAGCTCAGCCAACCCGCCAACCTCAACAGCTACGTCAAGACCGTGTCCCTGCCCAGCAGCTGCGCCGCCGCCGGCACCCGCTGCCTCATCTCCGGCTGGGGCAAcaccagcagcagtggcagcaacTACCCCGACCGCCTGAGGTGCCTGGATGCCCCCATCCTGAGtgacagttcctgcagaaactcCTACCCCGGTCAGATCACCTCCAACATGTTCTGCGCCGGATTCCTCGAGGGCGGAAAGGACTCCTGCCAGGGCGACTCCGGTGGACCCGTGGTCTGCAACGGACAGCTGCAGGGCGTCGTCTCCTGGGGTTACGGATGTGCCCAGAGGAACAAGCCCGGCGTCTACACCAAAGTCTGCAACTACAACACCTGGATCAGGGACACCATGAAGTCCTATTAAATTATCATTCCTGAGGTCTCAATAAAATTCCATTAGAAAATA

Function

NR:

description
trypsin-3-like

GO: NA

KEGG:

id description
K01312 PRSS1_2_3; trypsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235622.2 True 830 mRNA 0.60 1 22892472 22893301

Neighbor

gene id symbol gene type direction distance location
LOC103027133 fzd9,fzd9b,LOC107563503,LOC107713270,LOC107691950 coding upstream 76074 22813535 ~ 22816398 (+)
LOC103026853 LOC108429884 coding upstream 155843 22728533 ~ 22736629 (+)
rnf7 rnf7,LOC107557824,LOC107713281,LOC107692028 coding upstream 165026 22722720 ~ 22727446 (+)
LOC103028656 LOC108264789,LOC108429874 coding upstream 499897 22302354 ~ 22392575 (+)
snrpa snrpa coding upstream 604831 22282694 ~ 22287641 (+)
LOC103030816 NA coding downstream 167274 23060575 ~ 23094876 (+)
LOC103026225 cntn5,LOC107691883 coding downstream 484568 23377869 ~ 23673136 (+)
LOC103025495 LOC108429891 coding downstream 854441 23747742 ~ 23913263 (+)
LOC103024981 NA coding downstream 1050392 23943693 ~ 23949888 (+)
nectin1 nectin1,LOC107758086,LOC107670612,LOC107563312,LOC102782356,LOC107691861 coding downstream 1326558 24219859 ~ 24614929 (+)
G160137 baz1b non-coding upstream 31856 22857092 ~ 22860616 (+)
G160144 NA non-coding upstream 44709 22847391 ~ 22847763 (+)
G160129 NA non-coding upstream 146174 22745357 ~ 22746298 (+)
G160115 NA non-coding upstream 170712 22721208 ~ 22721760 (+)
G160106 NA non-coding upstream 219568 22670116 ~ 22672904 (+)
G160142 selenot,selt1b,LOC108429894,LOC108264179,LOC107557827,LOC107710848,LOC107684611 non-coding downstream 1754 22895055 ~ 22899397 (+)
G160160 NA non-coding downstream 18258 22911559 ~ 22948189 (+)
G160168 NA non-coding downstream 72032 22965333 ~ 22966591 (+)
G160212 NA non-coding downstream 334113 23227414 ~ 23227734 (+)
G160214 NA non-coding downstream 345430 23238731 ~ 23239091 (+)
G160134 NA other upstream 38391 22853412 ~ 22854081 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 739687 22147844 ~ 22152785 (+)
fam174b NA other upstream 1817899 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 1880678 21009302 ~ 21011794 (+)
G159728 NA other upstream 2155423 20736598 ~ 20737049 (+)
G160306 NA other downstream 1225828 24119129 ~ 24119825 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 3430519 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 3723961 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 4011943 26905244 ~ 26907627 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other downstream 4216370 27109671 ~ 27119264 (+)

Expression


Co-expression Network