LOC103041999 (LOC108435342,LOC107709801,LOC107691146)


Basic Information

Item Value
gene id LOC103041999
gene name LOC108435342,LOC107709801,LOC107691146
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 25632584 ~ 25643495 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235670.3
TAATCTTATGGTGGTGAGTCGCATCAACTCAAGTCATTGGAATAATCTGCGTGACAGTAAAATTTAAGATTGCGATAGTGTGGAAATTACTGAAAATGACCTTATGACCATGTggttaattaataataagagACAACAAGGAAGGTTGGGTATATTCTTTAGTGTTATCACTCAGCACTTGTCACTCAGACCAAAGGAGCAGCAGAATGACGGACACTGATGGGATTCAGTTAAAAGGTGTCTCCAGCATAAATGGACATGGAGTGGACAATCCAGCATTTCAAGCAGAGGATGAGAAACCGTCAGATCAACagaatgagcttcaagaggagGAAACAAAGAAATCCAAGTCCTTTGTAAATAAATTATTCACGCCTCTCACGGCCACTGAAAAGTTCCTGAAGACCCACTCTAAAATCATCAAGTACATTGCCCTGGGAATACTTTCAGCAGGCTATGTGGCGTACTTCATTGCTGCCTGCTGGCTGAACTTCCAGAGAGCTGTTGCTCTAGTTGTTCTCACCAGTGTGGCAGTGTTCTTCACTGTGTACGATCTTGTGAAGAAGTACAAGGGTGACAGTATAAAGCGGTGCTTCAAGCCTGCTGTGAGATGCTTTAATGCCAACATCAGGTGGATCAAATGGGTGTTTATAGTGATAGTGCTCGGACTGCTGGTGGCATGGCTGGTAGTAGACACAAGCAAGCGCCCGGAGCAGCTCATCTCCTTTGGTGGCGTGTGTCTCTTCATTTTGGGCTTGTTCTTATTTTCTGAACACAGAAGTGCGGTGCGCTGGAGGACCCTCTTCTGGGGTCTTGGTCTTCAGTTTGTCATCGGTCTGTTTGTTATACGGACAACACCAGGATATGTAGCTTTCAACTGGCTTGGAGATCAAGTTCAGacgtTTTTAAACTACACCCAAGCTGGCTCGGCTTTTGTTTTTGGTCAACTGGTTGAAGCAGGAATTTTTGCATTTCAGGCTTTGCCTATAGTgatttttttcagcagtgtTATGTCTGTCCTGTACTACCTTGGAGTGATGCAGTGGGTAATCCTTAAGATCTCCTGGATTATGCAGATCACAATGGGAACCTCTCCTACAGAGTCACTGAGTGTTGCAGGGAATATATTTGTTGGACAGacTGAAGCTCCACTGCTGATTCGCCCATATCTGAAAGACATGACCAAGTCTGAGATCCATGCGGTCATAGTTGGAGGTTTTGCCACTATTGCTGGCAGTGTGATGGGagctttcatttcatttggGATTGATGCTTCGTCTTTGATCTCTGCCTCTGTGATGGCTGCCCCTTGTGCCTTAGCTGTGGCCAAACTCTCGTATCCTGAGACTGAGGAGAGCAAGTTTAAATCCAAAGCTAATATCAAAGTGGACGGCGGgGGTGAACAGAATATTTTAGAGGCTGCAAGTGCAGGAGCATCTGCATCGATAGGTCTTGTGGCTAACATAGCTGCCAACCTGATTGCGTTTCTTGCAATTTTGGATTTCATTAacgctgctttgaaatggctggGAGGAATGGTGGGCTACCCAGATATCACTTTTGAGATCATCTGCTCATACGTGTTCATGCCTGTGGCCTTTATGATGGGTATACCAGTGGAAGAGTCCTTCACAGTGGCTGAACTCATCGGGACAAAGCTCTTCCTCAACGAGTTTATAGCTTATGAGAAGCTGTCCAAGCTGAAAAATAACCGACTAAACGGCATCACAGAAGTCGGGCAGTACATCTCAGTCAGATCAGAAATCATAAGCACCTATGCTTTGTGTGGTTTTGCCAACTTCAGTTCTCTTGGAATTGTCATTGGAGGCCTGTCCTCCATTTGTCCCTCAAGAAAAAGTGACATCTCTGCTTTAGTGCTGAGAGCCTTGTTCACAGGCACATGTGTTTCACTGATTAACGCGTGTGTTGCTGGTCTTCTTTTCGTTCCTCCCCTGGACTGTATAGCAGTGTTTAAAGGGACTGTCTTTAATGCCACTGATTCTAGTATCCAAACCTGCTGCTATGATCTCTTTGACAGTGCTGTGAGAAATGGAACACTGGTTTCTTTTGAGGGATCGTGGAACGTGGTGACAAATGCGACTGTTTACTTCACTGATTGTTGTCAACTTTTTAATGAAACCATATGCACTTGAGACCATTCGAAAGCAAACTTGTACACAATGTACACAGCtcattttaaacactgtaaagaAATGATTGTCATATGTTATAATGTATTTGCGTCACacaactcattttttttaatatgtggaTCACCATAAAACAATGTTGATATTTTCTgctgtattatatattgtaaataataaagagGGAAATCTAAGAAAATA

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: sodium/nucleoside cotransporter 2-like

GO:

id name namespace
GO:1901642 nucleoside transmembrane transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0005415 nucleoside molecular_function
GO:0001882 nucleoside binding molecular_function

KEGG:

id description
K11536 SLC28A; pyrimidine nucleoside transport protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235670.3 True 2348 mRNA 0.43 18 25632584 25643495

Neighbor

gene id symbol gene type direction distance location
LOC111194838 LOC108435311 coding upstream 38330 25593386 ~ 25594254 (+)
LOC103039536 napab,napa,LOC103039536,LOC108413256,LOC107668964,LOC107758075,LOC108264617,LOC103368726 coding upstream 45890 25581159 ~ 25586694 (+)
ehd2 ehd2b,ehd2,LOC103039027,LOC108413254,LOC101154661,LOC107565090,LOC107668886,LOC107670629 coding upstream 56487 25566292 ~ 25576097 (+)
bicra gltscr1,LOC108413251 coding upstream 67972 25549428 ~ 25564612 (+)
dhx34 dhx34,LOC102778731 coding upstream 111439 25510323 ~ 25521145 (+)
LOC103042827 NA coding downstream 21291 25664786 ~ 25686023 (+)
frmd5 frmd5,LOC108435336,LOC570903,LOC107562133,LOC107556247 coding downstream 45758 25689253 ~ 25838066 (+)
blm NA coding downstream 202121 25845616 ~ 25864023 (+)
ankrd34c ankrd34c,LOC103039005,LOC107691151,LOC107556256,LOC107715204,LOC107690404,LOC107551450 coding downstream 386304 26029799 ~ 26036700 (+)
idh2 idh2,LOC103368556 coding downstream 402847 26046342 ~ 26063314 (+)
G160616 sec11a,LOC107691153,LOC107562127 non-coding upstream 17286 25611716 ~ 25615298 (+)
G160617 kti12,LOC107715238,LOC107562123,LOC107725737 non-coding upstream 33283 25594952 ~ 25599301 (+)
G160576 psmd8,LOC108413249,LOC107672785,LOC107554985 non-coding upstream 85834 25540409 ~ 25546750 (+)
G160543 NA non-coding upstream 212645 25417643 ~ 25419939 (+)
G160518 NA non-coding upstream 252091 25323403 ~ 25380493 (+)
G160647 NA non-coding downstream 61022 25704517 ~ 25706252 (+)
G160654 NA non-coding downstream 95292 25738787 ~ 25739361 (+)
LOC111194781 NA non-coding downstream 194943 25838438 ~ 25842937 (+)
G160732 NA non-coding downstream 303300 25946795 ~ 25947007 (+)
G160746 NA non-coding downstream 350225 25993720 ~ 25993971 (+)
G160306 NA other upstream 1512759 24119129 ~ 24119825 (+)
G160134 NA other upstream 2778503 22853412 ~ 22854081 (+)
G159926 LOC108434146,LOC108434147,LOC108434134 other upstream 3479799 22147844 ~ 22152785 (+)
fam174b NA other upstream 4558011 21060656 ~ 21074573 (+)
G159748 chd2,LOC107715217,LOC107601632,LOC107549011,LOC107715589,LOC107690375 other upstream 4620790 21009302 ~ 21011794 (+)
LOC103037315 LOC108435313,LOC107551446,LOC107714780 other downstream 680325 26323820 ~ 26345682 (+)
LOC103021732 gramd1b,gramd1bb,LOC108264679 other downstream 973767 26617262 ~ 26755313 (+)
G160919 ptx3 other downstream 1261749 26905244 ~ 26907627 (+)
ccnl1 ccnl1,LOC107684610,LOC107557837,LOC107710830 other downstream 1466176 27109671 ~ 27119264 (+)
c18h3orf33 NA other downstream 2141401 27784896 ~ 27796504 (+)

Expression


Co-expression Network