LOC103043986 (LOC103027426)


Basic Information

Item Value
gene id LOC103043986
gene name LOC103027426
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 28292230 ~ 28293136 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237281.3
CCAAAAGCAGCGAGGCGTTCCTGACCAGCACAAACCATGAAGGCTCTCATTCTCCTGGCCCTGTGTGCCGTGGCGTACGCCGCTCCCATTGATGGTGATGACGACAAGATTGTCGGTGGCTATGAGTGCCAGAAGAACAGCGTGGCCTACCAGGTCTCCCTGAATGCCGGCTACCACTTCTGTGGCGGCTCCCTCATCAGCAGCCAGTGGGTGGTGTCTGCCGCTCATTGCTACAAGTCTCGCATCCAGGTGCGCCTGGGAGAGCACAACATCAACGTCAACGAGGGCACCGAGCAGTTCCTCAACTCCGCTGTGGTGGTCAAGCACCCTCGCTACAACGGCAACAACCTTGACAACGACATCATGCTGATCAAGCTCAGCCAACCCGCCACCCTCAACAGCTACGTGAAGACCGTTTCCCTGCCCAGCAGCTGCGCCGCCGCCGGCACCCGCTGCCTCATCTCTGGCTGGGGTAAcaccagcagcagtggcagcaacTACCCCGACCGCCTCAGGTGCCTGGATGCCCCCATCCTGAGTGACAGCTCCTGCAGAAACTCCTACCCCGGCCAGATCACCTCCAACATGTTCTGCGCTGGATTCCTCGAGGGCGGCAAGGACTCTTGCCAGGGCGACTCCGGTGGACCCGTGGTCTGCAACGGACAGCTGCAGGGCGTCGTCTCCTGGGGTTACGGCTGTGCCCAGAGGAACAAGCCCGGCGTCTACTCTAAGGTCTGCAACTACAACTCCTGGATCAGGGACACCATGAAATCCTATTAAATTACTATCACATGTTAAATCCTGATGTACATGAAAAGATCTCTGTAAACTAAACTTGAACACATTCAAAGCCTCTGTGTTTCTTAATCCTGTCTcttcagtaataaaaaaaagatgccaaCCATCA

Function

NR:

description
trypsin-3-like

GO: NA

KEGG:

id description
K01312 PRSS1_2_3; trypsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237281.3 True 907 mRNA 0.56 1 28292230 28293136

Neighbor

gene id symbol gene type direction distance location
LOC111194798 LOC108434033,LOC108264121,LOC108264117,LOC108264120,LOC107564266,LOC107695204,LOC107742945 coding downstream 91092 28199233 ~ 28201138 (-)
LOC103044334 LOC108264119,LOC107671059,LOC107707879,LOC107557164 coding downstream 119600 28167233 ~ 28172630 (-)
LOC103044641 v2rx3,LOC108434083,LOC108263925,LOC107730035,LOC107695206 coding downstream 125464 28161261 ~ 28166766 (-)
LOC111194794 LOC108434083,LOC108263925 coding downstream 137166 28150753 ~ 28155064 (-)
LOC111188222 LOC108434028,LOC108434027,LOC108437985,LOC108434080,LOC108433993 coding downstream 142985 28144115 ~ 28149245 (-)
arhgef26 arhgef26,LOC106581462 coding upstream 100145 28393281 ~ 28482220 (-)
rap2b rap2b,LOC107757383 coding upstream 328947 28622083 ~ 28624780 (-)
p2ry1 p2ry1 coding upstream 410743 28703879 ~ 28707145 (-)
ulk3 ulk3,LOC107665498,LOC107681021 coding upstream 1118027 29411163 ~ 29446961 (-)
larp6 larp6,LOC103354325 coding upstream 1208979 29502115 ~ 29514077 (-)
LOC111194799 LOC108264117,LOC108434033,LOC108264121,LOC108264120 non-coding downstream 89375 28202320 ~ 28202855 (-)
LOC111194796 NA non-coding downstream 101204 28181615 ~ 28191026 (-)
LOC111194797 NA non-coding downstream 102528 28187996 ~ 28189702 (-)
G161147 NA non-coding downstream 512443 27778724 ~ 27779787 (-)
G161136 NA non-coding downstream 589002 27692435 ~ 27703228 (-)
G161273 NA non-coding upstream 92511 28385647 ~ 28386666 (-)
G161275 NA non-coding upstream 95427 28388563 ~ 28390456 (-)
G161334 NA non-coding upstream 299029 28592165 ~ 28592552 (-)
G161363 NA non-coding upstream 434047 28727183 ~ 28727618 (-)
G161367 NA non-coding upstream 452563 28745699 ~ 28749048 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other downstream 713312 27429941 ~ 27578918 (-)
G160979 ccnl1,ccnl1a,LOC107710830,LOC107684610,LOC107714439,LOC107691967,LOC107563513 other downstream 1172977 27109707 ~ 27119253 (-)
LOC103037634 NA other downstream 1946521 26342351 ~ 26345709 (-)
G160715 NA other downstream 2552868 25738881 ~ 25739362 (-)
LOC103041696 NA other downstream 2689518 25600660 ~ 25602712 (-)
LOC111194804 NA other upstream 300364 28593500 ~ 28652947 (-)
LOC103037190 NA other upstream 593775 28886911 ~ 28941387 (-)
G161711 NA other upstream 2022470 30315606 ~ 30325858 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other upstream 2406034 30699170 ~ 30781708 (-)
tap1 NA other upstream 4358832 32651968 ~ 32675269 (-)

Expression


Co-expression Network