arhgef26 (arhgef26,LOC106581462)


Basic Information

Item Value
gene id arhgef26
gene name arhgef26,LOC106581462
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 28393281 ~ 28482220 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237282.3
GTGTCTCACGCGCCCGCGCGCGCTCACTCACTTACCTCACTCACAACACAGAGCAGCGGAGCGCGCGCTGCAGAGCGGAGGGAGCGAGGCCAGGCGCTCGCGGGAAACTTTGTTTTGGTTTAAAGTGATTCATCTTTACAGAACCGGATTAAACCCAGACCAGAACCGGACTAACGGATTATGCGTTGAGCGAACGGAAGAGCGCGCGGGACGGGGAAGGTTAGCTTGCACTGTGTGACATCACCACCCCTCACCGATTACCAGTTGCAAGCCTCCCTCTAAGATGGACCTCGGCAGTGAGGTCGACCTATCCAGCGGTAGCATTGCCCCACTGTGGAAGAAGCGATCAAACGGCCATACCAAACCCAGACCCCTAAGCTACCAAATCGAGGGGCTCCTCATGACGGACTTCCCTGCGGAACCGACTGAAAAGCTCCCCGCTCCTGCAGGGGGCACTATGGTGCTGAAGCACATCCTGAACAAACCAGCTACACGCAAGGCTCGCGTGGTCCGGAGTATTAGCATTGGGCGCATTAAGGATGGACGATTTTCTTTGGTCAGGTTCGGGTCAGAGGACAGTAAGGCTTTAGTGGACAGTTCGCCAACTAAAACGCCGACCAATCCCTGTTCAAAGACTGGAAATGGCTTGAGCTTTCGTGACCCTTTGAAACGACTGTCCGGCCAGGTTACCCTCACCAGTCAGAGGGACCAGATTGTGTTCAGGGACTCACCTGACAGCCCCCAGGAGTCAAACTGTCTGTCTCAGGAAAGTCCAGGCCGGATCTCCTCTCCAGCACAGCCCAGAGAGCTTCGCGGTTCTCCTGTTGCCCTACGGACTCCATCAGCCCATAGCTCCACCTCCAGCATCCCTTCTCTCTTTTCACCTTCCTCCTCCGCCCCCAGCACCCCTTCAGAACCGGCGACGCCCCGGACCCCTTCACCCTCCGATAGTGGCAGCATGGTGCTCCTGCGGCAGTCATCAGGCTCCTCTCAGGGCTCTGAAGGCAAGCCACCAACGCCTTCGGTGGTCCTCAGCACGCACAGTCCGGCAGCAATGAAGGTGGGCACCCAGCAGCTTATCCCACGAGGCCTGGTCTCAGAAACGCGACCCAGCAAGTCGTCCCAGGCAGGACCTGAGCGCCAGGGTCTCGGGAGTCTGCTGGACCCCTCCAAACGAGCTCTCCGTGCCCGCAGCATGGTGGAAACCGGTGCCTTCTTCTCTACCAGCAGAGACGATGAAGAGGACGTAGATGAAAGTCCTCAAATGTTCAAGAGAGGCCTGCGCTCCACTTCGTACCGCAGAGCTGTGGTTAGCGGAATCGACCAAGATTCCCCCACCGATTTGAAGAATCAACGCTTGTCTCAGCCTGTGCTCAAAGGAGTAGTGGAGGTCAAGGAGGGGCAAGGCAGCCCACAGGCAGCTACGAGCAAGGCACGAGTGTTAGATCAGAgtggagaaaagaagaaaggtCTGCAGCCCCAGAGAACGTTCGACAGTGAAGaggACGAGGTTCTGTATCAGAACTATCAGGAGAAAGCACTGCACAATGACTCAGACGAGGATGCTGAGTCCAGAGAAGCCAAACCAGAAGACCGCATTGTGGTCCAGAACAAACTCATCCGAACCTCGTGGAGTCAACTCAGTGTGGTTAAAAAGAGTGAAGCGGCAAAGAAGCTGAGCCAAGAGGAGCGAAAACGACAAGAGgCGATATTTGAAGTGATCTCATCAGAGCACAGCTACCTGCACAGCCTCATGATCCTCATTCGCCTGTTTAAggactctcaggagctcagcgAGACCATGACCAAGACGGACCACCACCACCTCTTCTCCAACATCGTGGACGTTTGTGAGACCAGTAAAAAGTTCTTTAAAGAGCTGGAAGACAGACACCAGCAGAACATTGTGATCGATGACATCAGCGACATCGTGATCAGACACGCCCAGTCCAACTTTGAGCCCTATGTGACGTACTGCTCTAACGAGGTGTATCAGCAGAGAACACTGCAGAGGCTGCTaagtaaaaatccatccttTAAGGAGGTCCTGAATCGTATTGAAACCCACTCTGACTGCCGGAATCTCCCCATGTGCTCTTTCCTGATCCTGCCCATGCAGAGGGTGACACGCCTTCCTCTGCTTGTGGATACCATTTGCCAGAAGACACCAAAAGACTCTCCCCAGTATGAGGAATGTAAAAAAGCTCTTCACTGCGTCAGCAAGctCGTTAGGAAGTGTAACGAGGGAGCTCGTAAGATGGAGCGGACGGAGATGATGTACACCATCAACTCTCAGCTGGAGTTTAAGATTAAGCCCTTCCCTCTGGTGTCTTCCTCTCGCTGGATGGTGAAGCGAGGTGAGCTGACTGCCTATTCAGAGGAGAAGAACAGCATCTTCTCTAAGAGGATGTCACGGCAGCAGGTCTACTTCTTTCTCTTTAACGACGTTCTGATCGTCACCCGCAAAAAGAGtGAGGAGAGTTATACAGTAATAGACTACGCACTGAGGGATCAGATCTGGGTGGGGTCATGTCAGCCAGAAGATCTCAACCTTTCTCCAACCCGGACCACCGCCGGCATGCTGACATCACGGCAAGGCGGAGCCAGTCATCTGTTCCGCCTTAAATTTCGCAGCAACCACTCGAAAGAAAAAGTGCTGATGATTCTGGGGGCGGAATTACTTAATGAGCGTGCTCGCTGGATCAGTGCACTGGGACAAAGCAACAATGAGAAGAGGAATTCTGACAGAATAAatGCCATGCAGGTGGAAGTGATCCGGACGTATACGGCCCGGCAGCCGGATGAGCTCTCGCTGCAGGTGGCTGATGTGGTGTTGGTGTCTCAGACAGTGGATGACGGCTGGTACGAGGGCATGCGTCTGCGAGACGGAGAGAGGGGCTGGTTTCTGTCTGAGTGCGCCCAGCCAATCACCTGCCAGGCCACCATCGAGAAGAACATGGAGAGGATGGACCGCCTGCAGGGCCTGGAGACCAACGTATGAACATGAGCTCCGTTTCCTTCACATGAacacctacagagagagagagagagagagagaagaacagagCAATGCAGAGCTATGGGGCTCAGCGGGAGTTACTGGTGGATATTGGAAGACTGCATGGATCAGCCAAACTGATCTTCACATGACTGAACAGTTCGTGCTAATCCGTTCCATTCGAACCTCAGAACATGGCTGCCAACAGACCTGGAGACTAAACTCTGCAGAAACTATGGAAGCTCTATATTCTGGCTTGTGTTCAACACAGCGACTAACAACAGCCTGTCTGCAGCTTTAATAAAGTGATGGAAGCTCCgcccagtccagtccagtccagtccagtgcTGTACTCACTTTAAGAGAAGCAGAACTCAACAGGAACCTGATGATCCAGACCTGGCTGAACAATTCTCTAGCATGGACCAGCA
>XM_007237285.3
GTGTCTCACGCGCCCGCGCGCGCTCACTCACTTACCTCACTCACAACACAGAGCAGCGGAGCGCGCGCTGCAGAGCGGAGGGAGCGAGGCCAGGCGCTCGCGGGAAACTTTGTTTTGGTTTAAAGTGATTCATCTTTACAGAACCGGATTAAACCCAGACCAGAACCGGACTAACGGATTATGCGTTGAGCGAACGGAAGAGCGCGCGGGACGGGGAAGGTTAGCTTGCACTGTGTGACATCACCACCCCTCACCGATTACCAGTTGCAAGCCTCCCTCTAAGATGGACCTCGGCAGTGAGGTCGACCTATCCAGCGGTAGCATTGCCCCACTGTGGAAGAAGCGATCAAACGGCCATACCAAACCCAGACCCCTAAGCTACCAAATCGAGGGGCTCCTCATGACGGACTTCCCTGCGGAACCGACTGAAAAGCTCCCCGCTCCTGCAGGGGGCACTATGGTGCTGAAGCACATCCTGAACAAACCAGCTACACGCAAGGCTCGCGTGGTCCGGAGTATTAGCATTGGGCGCATTAAGGATGGACGATTTTCTTTGGTCAGGTTCGGGTCAGAGGACAGTAAGGCTTTAGTGGACAGTTCGCCAACTAAAACGCCGACCAATCCCTGTTCAAAGACTGGAAATGGCTTGAGCTTTCGTGACCCTTTGAAACGACTGTCCGGCCAGGTTACCCTCACCAGTCAGAGGGACCAGATTGTGTTCAGGGACTCACCTGACAGCCCCCAGGAGTCAAACTGTCTGTCTCAGGAAAGTCCAGGCCGGATCTCCTCTCCAGCACAGCCCAGAGAGCTTCGCGGTTCTCCTGTTGCCCTACGGACTCCATCAGCCCATAGCTCCACCTCCAGCATCCCTTCTCTCTTTTCACCTTCCTCCTCCGCCCCCAGCACCCCTTCAGAACCGGCGACGCCCCGGACCCCTTCACCCTCCGATAGTGGCAGCATGGTGCTCCTGCGGCAGTCATCAGGCTCCTCTCAGGGCTCTGAAGGCAAGCCACCAACGCCTTCGGTGGTCCTCAGCACGCACAGTCCGGCAGCAATGAAGGTGGGCACCCAGCAGCTTATCCCACGAGGCCTGGTCTCAGAAACGCGACCCAGCAAGTCGTCCCAGGCAGGACCTGAGCGCCAGGGTCTCGGGAGTCTGCTGGACCCCTCCAAACGAGCTCTCCGTGCCCGCAGCATGGTGGAAACCGGTGCCTTCTTCTCTACCAGCAGAGACGATGAAGAGGACGTAGATGAAAGTCCTCAAATGTTCAAGAGAGGCCTGCGCTCCACTTCGTACCGCAGAGCTGTGGTTAGCGGAATCGACCAAGATTCCCCCACCGATTTGAAGAATCAACGCTTGTCTCAGCCTGTGCTCAAAGGAGTAGTGGAGGTCAAGGAGGGGCAAGGCAGCCCACAGGCAGCTACGAGCAAGAgtggagaaaagaagaaaggtCTGCAGCCCCAGAGAACGTTCGACAGTGAAGaggACGAGGTTCTGTATCAGAACTATCAGGAGAAAGCACTGCACAATGACTCAGACGAGGATGCTGAGTCCAGAGAAGCCAAACCAGAAGACCGCATTGTGGTCCAGAACAAACTCATCCGAACCTCGTGGAGTCAACTCAGTGTGGTTAAAAAGAGTGAAGCGGCAAAGAAGCTGAGCCAAGAGGAGCGAAAACGACAAGAGgCGATATTTGAAGTGATCTCATCAGAGCACAGCTACCTGCACAGCCTCATGATCCTCATTCGCCTGTTTAAggactctcaggagctcagcgAGACCATGACCAAGACGGACCACCACCACCTCTTCTCCAACATCGTGGACGTTTGTGAGACCAGTAAAAAGTTCTTTAAAGAGCTGGAAGACAGACACCAGCAGAACATTGTGATCGATGACATCAGCGACATCGTGATCAGACACGCCCAGTCCAACTTTGAGCCCTATGTGACGTACTGCTCTAACGAGGTGTATCAGCAGAGAACACTGCAGAGGCTGCTaagtaaaaatccatccttTAAGGAGGTCCTGAATCGTATTGAAACCCACTCTGACTGCCGGAATCTCCCCATGTGCTCTTTCCTGATCCTGCCCATGCAGAGGGTGACACGCCTTCCTCTGCTTGTGGATACCATTTGCCAGAAGACACCAAAAGACTCTCCCCAGTATGAGGAATGTAAAAAAGCTCTTCACTGCGTCAGCAAGctCGTTAGGAAGTGTAACGAGGGAGCTCGTAAGATGGAGCGGACGGAGATGATGTACACCATCAACTCTCAGCTGGAGTTTAAGATTAAGCCCTTCCCTCTGGTGTCTTCCTCTCGCTGGATGGTGAAGCGAGGTGAGCTGACTGCCTATTCAGAGGAGAAGAACAGCATCTTCTCTAAGAGGATGTCACGGCAGCAGGTCTACTTCTTTCTCTTTAACGACGTTCTGATCGTCACCCGCAAAAAGAGtGAGGAGAGTTATACAGTAATAGACTACGCACTGAGGGATCAGATCTGGGTGGGGTCATGTCAGCCAGAAGATCTCAACCTTTCTCCAACCCGGACCACCGCCGGCATGCTGACATCACGGCAAGGCGGAGCCAGTCATCTGTTCCGCCTTAAATTTCGCAGCAACCACTCGAAAGAAAAAGTGCTGATGATTCTGGGGGCGGAATTACTTAATGAGCGTGCTCGCTGGATCAGTGCACTGGGACAAAGCAACAATGAGAAGAGGAATTCTGACAGAATAAatGCCATGCAGGTGGAAGTGATCCGGACGTATACGGCCCGGCAGCCGGATGAGCTCTCGCTGCAGGTGGCTGATGTGGTGTTGGTGTCTCAGACAGTGGATGACGGCTGGTACGAGGGCATGCGTCTGCGAGACGGAGAGAGGGGCTGGTTTCTGTCTGAGTGCGCCCAGCCAATCACCTGCCAGGCCACCATCGAGAAGAACATGGAGAGGATGGACCGCCTGCAGGGCCTGGAGACCAACGTATGAACATGAGCTCCGTTTCCTTCACATGAacacctacagagagagagagagagagagagaagaacagagCAATGCAGAGCTATGGGGCTCAGCGGGAGTTACTGGTGGATATTGGAAGACTGCATGGATCAGCCAAACTGATCTTCACATGACTGAACAGTTCGTGCTAATCCGTTCCATTCGAACCTCAGAACATGGCTGCCAACAGACCTGGAGACTAAACTCTGCAGAAACTATGGAAGCTCTATATTCTGGCTTGTGTTCAACACAGCGACTAACAACAGCCTGTCTGCAGCTTTAATAAAGTGATGGAAGCTCCgcccagtccagtccagtccagtccagtgcTGTACTCACTTTAAGAGAAGCAGAACTCAACAGGAACCTGATGATCCAGACCTGGCTGAACAATTCTCTAGCATGGACCAGCA

Function

symbol description
arhgef26 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in activation of GTPase activity. Predicted to act upstream of or within endothelial cell morphogenesis and ruffle assembly. Predicted to be located in cytosol.

NR:

description
PREDICTED: rho guanine nucleotide exchange factor 26

GO: NA

KEGG:

id description
K13744 ARHGEF26, SGEF; Rho guanine nucleotide exchange factor 26

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237282.3 True 3429 mRNA 0.54 17 28393281 28482220
XM_007237285.3 False 3411 mRNA 0.54 16 28393281 28482220

Neighbor

gene id symbol gene type direction distance location
LOC103043986 LOC103027426 coding downstream 100145 28292230 ~ 28293136 (-)
LOC111194798 LOC108434033,LOC108264121,LOC108264117,LOC108264120,LOC107564266,LOC107695204,LOC107742945 coding downstream 192143 28199233 ~ 28201138 (-)
LOC103044334 LOC108264119,LOC107671059,LOC107707879,LOC107557164 coding downstream 220651 28167233 ~ 28172630 (-)
LOC103044641 v2rx3,LOC108434083,LOC108263925,LOC107730035,LOC107695206 coding downstream 226515 28161261 ~ 28166766 (-)
LOC111194794 LOC108434083,LOC108263925 coding downstream 238217 28150753 ~ 28155064 (-)
rap2b rap2b,LOC107757383 coding upstream 139863 28622083 ~ 28624780 (-)
p2ry1 p2ry1 coding upstream 221659 28703879 ~ 28707145 (-)
ulk3 ulk3,LOC107665498,LOC107681021 coding upstream 928943 29411163 ~ 29446961 (-)
larp6 larp6,LOC103354325 coding upstream 1019895 29502115 ~ 29514077 (-)
LOC111194841 NA coding upstream 1121515 29603735 ~ 29604672 (-)
G161275 NA non-coding downstream 2825 28388563 ~ 28390456 (-)
G161273 NA non-coding downstream 6615 28385647 ~ 28386666 (-)
LOC111194799 LOC108264117,LOC108434033,LOC108264121,LOC108264120 non-coding downstream 190426 28202320 ~ 28202855 (-)
LOC111194796 NA non-coding downstream 202255 28181615 ~ 28191026 (-)
LOC111194797 NA non-coding downstream 203579 28187996 ~ 28189702 (-)
G161334 NA non-coding upstream 109945 28592165 ~ 28592552 (-)
G161363 NA non-coding upstream 244963 28727183 ~ 28727618 (-)
G161367 NA non-coding upstream 263479 28745699 ~ 28749048 (-)
G161377 NA non-coding upstream 340497 28822717 ~ 28862392 (-)
G161400 NA non-coding upstream 581607 29063827 ~ 29064178 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other downstream 814363 27429941 ~ 27578918 (-)
G160979 ccnl1,ccnl1a,LOC107710830,LOC107684610,LOC107714439,LOC107691967,LOC107563513 other downstream 1274028 27109707 ~ 27119253 (-)
LOC103037634 NA other downstream 2047572 26342351 ~ 26345709 (-)
G160715 NA other downstream 2653919 25738881 ~ 25739362 (-)
LOC103041696 NA other downstream 2790569 25600660 ~ 25602712 (-)
LOC111194804 NA other upstream 111280 28593500 ~ 28652947 (-)
LOC103037190 NA other upstream 404691 28886911 ~ 28941387 (-)
G161711 NA other upstream 1833386 30315606 ~ 30325858 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other upstream 2216950 30699170 ~ 30781708 (-)
tap1 NA other upstream 4169748 32651968 ~ 32675269 (-)

Expression


Co-expression Network