rap2b (rap2b,LOC107757383)


Basic Information

Item Value
gene id rap2b
gene name rap2b,LOC107757383
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 28622083 ~ 28624780 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237286.3
GGAAGggagtgtgtgagttgtgtgtgtgtgtgcgcgagcgagcgagagagggagTGCAGACTGAGAGTACACCGAGCACGGATCTCCGCCGCACACGGTCCGCCCGCCCGCTCGCGACGGGCTGTTTCTGATGCAGCGGCACGGcccggagcagcagcaggaggctCGCGCGCACCGAGGAGAGGAGGGACacgagctgcagctgcagcggCCGCGGCGGCGGAGGGGGGCGCGTGCACGCGCGTGAGGGGAGCGGAGCGGAGCCATGCGGGAGTACAAAGTGGTGGTTCTGGGCTCCGGCGGCGTGGGCAAGTCCGCGCTCACCGTGCAGTTCGTGACCGGCTCGTTCATCGAGAAGTACGACCCCACCATCGAGGACTTTTACCGCAAGGAGATCGAGGTGGACTCCTCCCCGTCCGTGCTGGAGATTCTAGACACGGCGGGCACGGAGCAGTTCGCCTCCATGCGCGACCTGTACATCAAGAACGGCCAGGGCTTCATCCTGGTCTACAGCCTGGTCAACCAGCAGAGCTTCCAGGACATCAAGCCTATGCGCGACCAGATCGTGCGCGTCAAGCGCTACGAGCGCGTGCCCATGGTGCTAGTGGGCAACAAGGTGGACCTGGAGGGAGAGCGCGAGGTGGCGGCGGGCGAAGGCAAGGCCCTGGCGGACGAGTGGAACTGCCCGTTCATCGAGACCTCGGCCAAGAACAAGACCAGCGTGGACGAGCTGTTCGCCGAGATCGTGCGGCAGATGAACTACGCGGCGGCGCCCGGCGGGGACGAGCAGTGCTGCGCGTGCGCGATCCTGTGAGGAAAAAAGAGTGGCGGAGACTCGAGCgggagcgagcgagcgagctgTAGTAGCGGGGGGCGCTGCGCTGCACGCCGGGGAGAGAGGGGCGGCGAGGCGCGGCGAGCAGCAGCGGTGGAGGAGGCGGAGAGCATGAGGAGGAGAAACGGGGACGCGCACCGGCCACAGACTGCGGGGAGTGGAggaccaaaaacacacattcacacacagataAACTTATACATACAACAAGGAGCAGCGCGTGACACGGCTGGagttatctctctctttctttctctcttttttctctttctctctgttattctctctctttctctggggGCCTATacttaaaagcttaaaaaacttaaaatcgcGCAGAACAGAGACAAAAACGACGACAACAATATACGAAAATCAGTGTTTACAATATGGCAGAATACTTGAATGTTGTGGgatctttcttttattattattttttcttcctttagacgtgaaaacactgaaacagcAGTGGGCACTGGAGTCCGGTtcgtttttttaaggttttactgtttttacttttttataattttaaaagaGAAAGTAGGTGCCTGGCACAAGGGAGACGTTTACTTTTCGAGCTCGCTCAATTTTTTGCTTGAACATCTCTTCTGTTCTGGAGTtgtggaggggtgtgtgtgtgtaaaagggagagagagaaggggttGTGAACTGTTGTTGAGCTACGTGTCGAAGCCCCCCCTCCCCTCTTCCCTCTCTCCTTTTTTGCCTTGGCTGCGGAGAGAGAATTCCTTTAAGGGAGGAGACAGCtggagttctctctctctgtctgtttctctctgtctgtctctctctttctgtctttctttttctcagatttttttctcttgCTTATCTTTTATTTgaactctctctgtctgcacACTCTCTGGGCTCCGTctccatattttatttaatttatttttattttgcttttttccttgtttattttagtttgagacttttatttagttttttggtCTCTGGCGGACTTCAGGAGGACCCCCAACCCCCCCTCCACCATCCCAATACTGAAGCAGAGCACGTCACgtgactctctgtctctctttctgaggGTGTATCAATGGATCGTCATTGTGATTCTTTCCCAAAgtattgcattttattattattaatattattataattattagtttttttttctttaaaaaggaaGACTTTTGACGACAGAGTTTAAAACCTTTTTGACGAGAGTTTAAAACCACTTAACGCTGACCGGTGCCATcgtctcttttttgtttgtttttgcgcGCGAGGACCTTACTGTAGTGACGCAAGGACGTCGAGGTGACGTACCGTGTGCGTCGAGTGCCTTCCAAAACCAAGCTGTTCATATTCTTAGTGCCAACCTGAGGGAAAGGtctgaggaggaaaaaaaacaaggagtTTATGGCAATCCATAGGAGAGCGAACACTTAAAGTACTTAACGAACTGAACTGTTACCTTTGGGGGGGATTAAGAGTATAACATAAGAAACCTGTTGTTGAAAGGAATGGCGGTTTTCTTTCCCTCCTCCTGCTCTCAATTTAGCctcttctttttgttctttttgaatCCTGAAACTGGTCTACTCTTCCCCTAAAGAAGTCTGGAAATAAAAAGACAGGTACTGGGACCTCACCTCCCCATGACTCAACAACACATCCTCTAGACCAGTGAAATCAAAAGTCCCCCACtttggttttgttttgctttcatttttttttttttttacagaaatttgATGTAACATTTGAAATTCTAGTCCGATTGTACGTTCACTTTCAGACCGGCTTTTTAACAGCCGTTctgactgtttaaaaaaaaagacttttaatacagattgcatttttaaaaaaaca

Function

symbol description
rap2b Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to be involved in Rap protein signal transduction and negative regulation of cell migration. Predicted to act upstream of or within signal transduction. Predicted to be located in recycling endosome membrane. Predicted to be active in plasma membrane. Orthologous to human RAP2B (RAP2B, member of RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rap-2b-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07838 RAP2B; Ras-related protein Rap-2B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237286.3 True 2698 mRNA 0.50 1 28622083 28624780

Neighbor

gene id symbol gene type direction distance location
arhgef26 arhgef26,LOC106581462 coding downstream 139863 28393281 ~ 28482220 (-)
LOC103043986 LOC103027426 coding downstream 328947 28292230 ~ 28293136 (-)
LOC111194798 LOC108434033,LOC108264121,LOC108264117,LOC108264120,LOC107564266,LOC107695204,LOC107742945 coding downstream 420945 28199233 ~ 28201138 (-)
LOC103044334 LOC108264119,LOC107671059,LOC107707879,LOC107557164 coding downstream 449453 28167233 ~ 28172630 (-)
LOC103044641 v2rx3,LOC108434083,LOC108263925,LOC107730035,LOC107695206 coding downstream 455317 28161261 ~ 28166766 (-)
p2ry1 p2ry1 coding upstream 79099 28703879 ~ 28707145 (-)
ulk3 ulk3,LOC107665498,LOC107681021 coding upstream 786383 29411163 ~ 29446961 (-)
larp6 larp6,LOC103354325 coding upstream 877335 29502115 ~ 29514077 (-)
LOC111194841 NA coding upstream 978955 29603735 ~ 29604672 (-)
LOC111194843 NA coding upstream 1136888 29761668 ~ 29765504 (-)
G161334 NA non-coding downstream 29531 28592165 ~ 28592552 (-)
G161275 NA non-coding downstream 231627 28388563 ~ 28390456 (-)
G161273 NA non-coding downstream 235417 28385647 ~ 28386666 (-)
LOC111194799 LOC108264117,LOC108434033,LOC108264121,LOC108264120 non-coding downstream 419228 28202320 ~ 28202855 (-)
LOC111194796 NA non-coding downstream 431057 28181615 ~ 28191026 (-)
G161363 NA non-coding upstream 102403 28727183 ~ 28727618 (-)
G161367 NA non-coding upstream 120919 28745699 ~ 28749048 (-)
G161377 NA non-coding upstream 197937 28822717 ~ 28862392 (-)
G161400 NA non-coding upstream 439047 29063827 ~ 29064178 (-)
G161411 NA non-coding upstream 572467 29197247 ~ 29197677 (-)
kcnab1 kcnab1,LOC108263953,LOC107675612,LOC102797568 other downstream 1043165 27429941 ~ 27578918 (-)
G160979 ccnl1,ccnl1a,LOC107710830,LOC107684610,LOC107714439,LOC107691967,LOC107563513 other downstream 1502830 27109707 ~ 27119253 (-)
LOC103037634 NA other downstream 2276374 26342351 ~ 26345709 (-)
G160715 NA other downstream 2882721 25738881 ~ 25739362 (-)
LOC103041696 NA other downstream 3019371 25600660 ~ 25602712 (-)
LOC103037190 NA other upstream 262131 28886911 ~ 28941387 (-)
G161711 NA other upstream 1690826 30315606 ~ 30325858 (-)
LOC103042221 LOC105901649,LOC107568871,LOC105028370,LOC108413244,LOC567622,LOC103367052,LOC107379323,LOC100706402,LOC101466533 other upstream 2074390 30699170 ~ 30781708 (-)
tap1 NA other upstream 4027188 32651968 ~ 32675269 (-)
LOC103042403 slc25a32,LOC102777849,LOC107756894,LOC107726671,LOC107688281 other upstream 5473148 34097928 ~ 34115402 (-)

Expression


Co-expression Network