LOC103045417


Basic Information

Item Value
gene id LOC103045417
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 37387494 ~ 37399839 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007239647.3
ACAGACTAGTTTCTGATTCTAATCTTACAGAAGGCCGGTCAGACTGCTGCTCTGCTATGGCCACACGATGGGGCATCTGTGGCGCAGGAAAGATCAGCCATGACTTCAGCGTGGCTCTGAAAACCCTGCCAGCCAGAGAGCATCAGATAACAGCGGTGGCTGCAAGGAACCTGGAGAGAGCACAAACATTCGCTAAGACTCATGGCATCCCCAAGGCTTACGGGAGCTACCAGGAGCTTGCTGATGACCCAAATATCGACATCATATACCTGGGTGTTCTCCACACTGAGCACCTGAAGCTGGGTCTGCTGTTCCTGAATGCTGGGAGGAACGTGCTCTGTGAGAAGCCGTTTGCCATGAACCTCAGGGAGGTCAACCAGCTCATCACAGCATCCAGGAGGAGCAACGTCTTTCTCATGGAGGCTGTGTGGTCGAGGTGTTTCCCGGTGTACAGTGAGGTAGGCAGGCTGCTGGGTGAGGATGCTGTTGGAGAGGTGAAGCTGGTGAAAGCTTATTTCGGATCCCCGCAGCTGCACGTCCCCCGCTCGGTGGAGAAGGAGCTGGGAGGAGGAGCTCTGCTGGACATTGGAATGTACTGTCTTCAGTTGGTGCTGATGGTGTTTAAGGGGGAGAGACCGAGGTCTGTCCACGCCACAGGAGTGCTGCTGGACTCGGGTGTGGACGAGTCAATGGTGGTGGTTCTGAAATTTTCACGGGACCGGTTGGCCTGGTGTGCTTTCTCTATTGCTGTGGCTCTTTCCAATGATGCCATCATCACTGGCACCAAGGGCTCCATCAGGGTTGCTTTGCCCATGCATTGTCCAACCACTCTGGAGGTGAACGGAAGGCAGACTGAGTTTCCTCTTCCGGAACCTTCTCTGCCTCTCCACTTCACCAACAGCACAGGGCTGCGATACGAGGCTGAGGAGGTCAGACACTGCTTACTCAAAGGGCTGAAGGAGAGCAGCAGGATGAGTCTGGCAGATTCTCAGCTGCTCACTGAGATCATGGATGAAGCTCGGAAACAAGTGGGAGTAGTTTTTGATCAGGACAGCCGGTGAATGTCCTGTGTTCTTTTTCACCACTTCAATTCACACAGAGTTATCACTAAGAGCATCACTAGCTAACAGACCCTGTCTACCATTAACTGAAGAGCTGAAGTCCACACATGATTGTAGTTCCACTGTGAAGAGtgattatttgtgtgttttctggaaacAGAAACCTGCTGCACTGccagattattatattataatcatTCATTTTGTCTTTACCTGACTGTTGAATTAATTCTTGTTAAAGAGatttctaaattaaattaattgtctGTTTTG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K22230 iolU; scyllo-inositol 2-dehydrogenase (NADP+)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007239647.3 True 1334 mRNA 0.50 7 37387494 37399839

Neighbor

gene id symbol gene type direction distance location
LOC103026877 unc13c,LOC108411445 coding upstream 125509 36970710 ~ 37261985 (+)
LOC111194719 NA coding upstream 947686 36391175 ~ 36439808 (+)
rab27a rab27a,LOC107735066,LOC107600376,LOC107659079 coding upstream 1164459 36188768 ~ 36223035 (+)
LOC103046170 NA coding upstream 1239392 36142088 ~ 36148102 (+)
dnaaf4 NA coding upstream 1250754 36127139 ~ 36136740 (+)
LOC103045107 dhdh,LOC108431994,LOC107665090,LOC106587215 coding downstream 1689 37401528 ~ 37407914 (+)
parp6 parp6 coding downstream 55896 37455735 ~ 37507197 (+)
LOC111194820 celf6 coding downstream 190146 37589985 ~ 37835900 (+)
LOC103021700 LOC103021700,LOC102310173,LOC102785042,LOC102211940,LOC101470544 coding downstream 544362 37944201 ~ 37946249 (+)
LOC111194723 LOC107704663 coding downstream 1544563 38944402 ~ 38945904 (+)
G163095 NA non-coding upstream 13289 37374006 ~ 37374205 (+)
G163087 NA non-coding upstream 15646 37366118 ~ 37371848 (+)
G163071 NA non-coding upstream 86372 37300767 ~ 37301122 (+)
G163049 NA non-coding upstream 136156 37250743 ~ 37251338 (+)
G163045 NA non-coding upstream 295912 37090108 ~ 37091582 (+)
G163110 NA non-coding downstream 37729 37437568 ~ 37438049 (+)
G163161 NA non-coding downstream 148198 37548037 ~ 37548293 (+)
G163241 cox5ab,LOC107595344,LOC107713225,LOC103046663,LOC108432642,LOC107665137 non-coding downstream 564491 37964330 ~ 37977105 (+)
G163247 NA non-coding downstream 585219 37985058 ~ 37987068 (+)
G163288 NA non-coding downstream 1271443 38671282 ~ 38672233 (+)
LOC103046025 hcn4,LOC108263998 other upstream 34715 37287167 ~ 37352779 (+)
G162964 LOC108431875,LOC108413582 other upstream 632807 36754185 ~ 36754687 (+)
ccpg1 ccpg1 other upstream 1217749 36132415 ~ 36169745 (+)
pygo1 pygo1 other upstream 1267092 36112042 ~ 36120402 (+)
ss18l2 ss18l2,kiaa0355 other upstream 1572701 35807865 ~ 35814793 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other downstream 10153 37409992 ~ 37411969 (+)
reln reln other downstream 2175250 39575089 ~ 39788454 (+)

Expression


Co-expression Network