LOC103039568 (sox9)


Basic Information

Item Value
gene id LOC103039568
gene name sox9
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 40264663 ~ 40270386 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007241020.3
GGAGTGCGTTAGTGTGTcgcgtgtgtgtgttcagacgCACGAGCGGAGGATTTCCTTCTTTCCCACAACTTACTTTGACTTACTTTTGATCGTTCTGAAGACAGAAGAAGAGTCGCAGTGCAGTCGGCGAGTGACTTTGATGTTTACGCGTTTTGATGTTttgtcaaaacatttttttgcacggaaaaaaaagaaaagtatctTTCTGCATGGGACCAGCGCGCGAGCCTCACTGCTGAGAGCGCGCGTGCAcgagaaaaaaatacaacagcaacaaacaaacaagaaaattcCGACAACGGACTTTTGCGACGTTTTTACCTTACCGCTTTTTTAATTAGCGCGCGCGCAGATATTTAGCGCACAGattgtgctttttttctttttgcatttgttGATTTTCTGCACGCTCCGTGCGCACGAGGATCTCTTCCCCCTTAGTTTCTACGCATTTTTTTCGTATGAATCTCCTCGACCCCTACGTGAAGATGACCGACGACCGGGACAAGTGTCTCCGCGACGCCCCGAGCCCCGGTATGGATTCCGAGGACTCCGGCGCCGCCTCCCCGTGCCCGTCCGGTTCGGGCTCGGACACGGAAAACACGCGGCCAACCGACATCCACGACGATTTTAAGAAGGACGATGAGGAAAAGTTCCCCGTCTGCATCCGGGACGCAGTGTCGCAGGTGCTGAAGGGCTACGACTGGACGCTCGTGCCCATGCCGGTGCGCGTTAACGGCTCGAGCAAGAACAAGCCGCACGTGAAGAGACCGATGAACGCGTTTATGGTGTGGGCGCAGGCGGCGCGGAGGAAGCTTGCGGACCAGTACCCGCATCTGCACAACGCGGAGCTCAGCAAGACCCTGGGAAAACTGTGGAGGCTGCTGAACGAAGGTGAGAAGCGCCCGTTCGTGGAGGAGGCCGAGCGACTGAGGGTTCAGCACAAGAAGGACCATCCCGACTACAAGTACCAGCCGAGGAGGAGGAAGTCGGTGAAGAACGGCCAGTCGGAGTCGGAGGACGGCGAGCAGACCCACATCTCGCCCAACGCCATCTTCAAAGCCCTGCAGCAAGCCGACTCGCCCGCCTCCAGCATGGGCGAAGTGCACTCCCCCTCAGACCACTCAGGTCAATCCCAAGGTCCTCCAACGCCACCGACAACCCCTAAAACAGACCTTCCCGGCAGCAAACCAGACCTAAAGCGCGAGGGACGCCCCCTGCAGGATGGTGCCGGTCGCCAGCTCAACATCGACTTCAGGGACGTGGACATTGGCGAGCTGAGCAGCGACGTCATCTCCAACATCGAGACCATCGACGTCAACGAGTTCGACCAGTACCTGCCGCCGCACGGTCATCCGGGGCTTCCCGCCAACGCTCAAGCCTACTCAGCCAGCTACGGTCTGTCCCTCTCAGCTGGTTGGATGTCcaagcagcatcagcagcagcagccacagCAGCCGCCACAGTCGCAATCGCAGCCACAGCAGCCACCACAGCACTCCCTGACCACGCTGACCCCGGCAGACCAGAGCCAGTCCCAACAACGCCCGGCACAGATCAAGACAGAGCAGCTGAGCCCCAGCCACTACAGCGACCAAGGCCAGGGTTCTCCTCAACACGTAGCGTACGGTTCCTTCAACCTGCAGCACTACAGCACCTCGTCCTACCCGTCGGTCGCACGCACCCAGTACGACTACGCCGACCACCACAGCAACTCGTACTACAGCCACGCCGCCGGCCAAGGCTCCGGCCTCTACTCCACCTTCAGCTACATGAGTCCGGGAGCACAGAGGCCCATGTACACCCCGATCGCCGACACCACCGGCGTACCGTCCGTGCCTCAGACCCACAGTCCCCAACACTGGGAGCAGCAACCCGTCTACACCCAGTTGTCTCGACCTTAAAAAACGAACGTTAAAAACAAAACACGCCGATCGAACAGATCAAACGGACTGGAAAAAGTTTCTATCGCCACTTTTGTTCATCGCTACCAGAGATCCGGactcaagacttttagtagccTTTAGACGCCTTGGAAGGTTCCTTCTTCGGTTCCTTCCCTGCACAAGCCAACGCAACTCAACAGAACTCAATACAACTCAATAGaactcaacacaactcaacacagctCAATAGAACACAACTCTTACACAGTGCAAACAAGAAGCGGAAATCATTTAAGCAAGCAAGCAGAGCGAGGTGCAGGACtttgactttttaacattttttttttctttcgttcgttcttttgtttcattttgttttttccttcttAGAAGAAAGATATCGGAAATGGCTCCCGACAGtgccttttttttaagcagaaaaAGTTCGAAGCGCTCGAGTTGCGATTATATTTTTCTAGTTCTGATGAAAAAGATTGAAAACTCGCTCGAATGAGAGGAATCCTCTGTGAGGACATATctgttataaatattttagtatgtactgtgtatgtattatatctttctttatttctcactctctctatcgctcAGTCTCTTTTCGTCGTTATCGTTATTGTCGTCATTGTCGACAttgtctttgttttcaggtcaggtttacgctcttcttcttcttttacttcttctttttctttttctggggaATTTGTACAAAATTTGTTTATACAAAAGAGGATGCCATAATAAGGTGGGGTTCCCCTGTTGTGTCCCTCCTTGATTGTCCCCTTAATTTACGttttaactaaactaaaacaacaatgccTTCTCTAACACGtccctttttttaatttctgtacatatactgtattttaacgccatttcttctgtgttttagaATCAGGCAGAGTTTATCTGATTTGCGGTGCCTAGTGTAAGCTCCTTCTcagtgatgctaatgctaatgctaaagcagCGTCCTCAAAAATGGATCAGCCATAGCCAGAATAAGATTTAACGAAGATTTTAACAATGATTTTAATGAACATCCTGCCTTTGTGCCGTCAGTGCCTGGTGCCAGTGTAGAGATCTGTAGTGCCTCAACTCACCTAGTGCCATCACttacctctatctctctctatctgtctatctctcttaaTCTGTCCACGTCTGAAGAGTCCTAAGACTTTTGGACGCTCCCTGTTGGATAAATTATCATTCCCTCAGACCCTGTTaagtttttactattttttcttttttaacctcgttaatttattcattagtattaattttattttaaaaaaaataattttcatttttgttatttacttAATTTGCCTCATTATTACAtctaatttgattttttttttggagagatTCCAGTCAAATTGTGTCAAGTGGTACaaactttacaactttacttTAACCATCTTGGGTTATTTATCATCATTCGTTGTTGTAAATGTttccatttattataattattgttttttttattattatttcgcATCTCTTTTGATTATCTAGTTGTGTACAGATTTCTTACAAATGTGATTGAAAAAAACTtgatcacattaaaaaaaaaaaaacagatacaactggaatttttttgttttttttataattattattattattttctcttttaattttaacaaataatgaataaaattgaTTTTACTGGAGGCCGTGGCCATATTGCCATATTGTAAAGACTTTTCCTCTTTACTGAATCACCAGCGTACctttaaaacatgttctgttcTTTATTCATTCCTGCATATGTTAGATCTCATCTACATCCTTTAATGCAAATGAATCTTTGTAAAAAAACACGCCATTGTCTTAAGAGAAGCTTATCTTTTGTATCATACTGTTTgcaataaaagtgaaaaaaggtacagaaaatataaaa

Function

symbol description
sox9 Enables several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and protein kinase A catalytic subunit binding activity. Involved in several processes, including animal organ development; positive regulation of cell population proliferation; and regulation of transcription by RNA polymerase II. Located in nucleoplasm. Part of protein-containing complex. Implicated in 46,XX sex reversal 2; 46,XY sex reversal 10; and campomelic dysplasia.

NR:

description
PREDICTED: transcription factor SOX-9

GO: NA

KEGG:

id description
K18435 SOX9; transcription factor SOX9 (SOX group E)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007241020.3 True 3816 mRNA 0.46 3 40264663 40270386

Neighbor

gene id symbol gene type direction distance location
LOC103034226 NA coding upstream 336745 39838037 ~ 39927918 (+)
LOC111194742 NA coding upstream 444039 39814996 ~ 39820624 (+)
LOC103038446 LOC108443054,LOC108263931,LOC108265089 coding upstream 772587 39487766 ~ 39492076 (+)
pik3c2a pik3c2a coding upstream 926785 39271936 ~ 39337878 (+)
tspan3 tspan3,tspan3a,LOC107690355 coding upstream 1073258 39185222 ~ 39191405 (+)
LOC103036843 sstr5,LOC108241368,LOC103468864,LOC107083133,LOC106942343,LOC103140984,LOC102219310,LOC106518680 coding downstream 488889 40759275 ~ 40765548 (+)
LOC111194726 sstr5,sstr2,LOC106601899,LOC101075299,LOC106606408 coding downstream 636755 40907141 ~ 40910721 (+)
rab26 rab26,LOC102798624,LOC100707100,LOC101484267 coding downstream 877958 41148344 ~ 41319019 (+)
G163791 NA non-coding upstream 54959 40209443 ~ 40209704 (+)
G163789 NA non-coding upstream 64171 40200224 ~ 40200492 (+)
G163773 NA non-coding upstream 71439 40111071 ~ 40193224 (+)
G163772 NA non-coding upstream 150360 40109398 ~ 40114303 (+)
G163769 NA non-coding upstream 206055 40058342 ~ 40058608 (+)
G163817 NA non-coding downstream 197251 40467637 ~ 40468459 (+)
G163820 NA non-coding downstream 292917 40563303 ~ 40563857 (+)
G163859 NA non-coding downstream 332998 40603384 ~ 40604210 (+)
G163861 NA non-coding downstream 339755 40610141 ~ 40630044 (+)
G163868 NA non-coding downstream 394373 40664759 ~ 40669663 (+)
reln reln other upstream 476209 39575089 ~ 39788454 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other upstream 2852694 37409992 ~ 37411969 (+)
LOC103046025 hcn4,LOC108263998 other upstream 2911884 37287167 ~ 37352779 (+)
G162964 LOC108431875,LOC108413582 other upstream 3509976 36754185 ~ 36754687 (+)
ccpg1 ccpg1 other upstream 4094918 36132415 ~ 36169745 (+)

Expression


Co-expression Network