LOC103046335 (ch25hl1.2,LOC108435345,LOC107691130,LOC107725743,LOC107567893,LOC102790067)


Basic Information

Item Value
gene id LOC103046335
gene name ch25hl1.2,LOC108435345,LOC107691130,LOC107725743,LOC107567893,LOC102790067
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 39173324 ~ 39175138 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007241930.3
acacacacacacacacacacacacttgcatccCGGCGCCCGGTCTCACCTGCGGCTCACCTGCGGCTGTAGCCGGTGCGGGGTGAGGTCGGAGGGGGGGGCGCGCTGCACGCGGCGGGTCCTCGACAGCTCGTGCGCTCAGTAAGCGAACCGTTCCGTAACGCTGCGCAACGTTTTCTCATCCCCGCCGCTCAATCATCAtaaccatcatcaccatcatcatcatcacccgCTCGCgcattattatacagtatattaaacagTTCAGATCTGATCAGCTATTAACAGAACTTTATACTGATGTGTTTGAGGCGTTTGCATGATCAGTGCTCTGATCAGTGGGTTTGATCTGGAGATGTCTGATCAATGATCATCAATAACCAGGCTTACAGCCCTGCAGCACTAACGCACACATTCCTCTGAAGACCTGCGTTTGGGAAATCTTTGCACAGGAGTGTAAAAGTTGGGCTGGGGTTTGGTTGTTCGCAGCTCGTTACCGGGGAGcagtgtgtaaatattttagagAGGATGTCACTGGATACCTGCTCGAGCTGTCAGCCATGTAAACCTCACTGAGCCCTGGGAGCTTCAGTGATCTCAGCTCTACATCTCTGAACGCTTAccgctgctgctcctgctgtgctgtgctgtggtgGATCTGCGGCGCGATGCAGCTCAGCGAGGCCGTGTGGGAAAGCTGTAGTCAGGGGTCTGTTCTGCAGCCCCTGTGGGACTATCTGCGGCTGCATCACTCCAGCACTCTGAGGTCCCCCCTGTTCCCCGTGATCCTGTCAGTGTCCTCGTACTTCGTGCTCTGCCTGCCCTACCTGCTCTGTGACGTGGCTGGAAAGAAGTGGCCGGCCATCTACAGGTACAAGATCCAGCCGGACCGGTTGCCCACCTTTACCATGATGCTCCGCTGTGCCGGCGTCACTCTCCGCAACAACGTCTTCCTGGTGTTCCCGGCGGCCGTCGCCCAGTGGGCCTGGAGGCCTCCGGTTCCTTTGCCCGAACAGGCACCCACACTGCTGGAGCTGGTTGGAGGTGTGGCAGGTAACCTCCTGCTGTTTGATTTGCAGTACTTCATCTGGCACCTACTGCACCACAGGGTACGCTGGCTGTACGTTACCTTTCACGCCATCCACCACGAATACTCCGCACCCTTTTCCCTGGCCACGCAGTGCTTGGGGGGCTGGGAGTTGGTCACTGTGGGTTTCTGGACCACCATCAACCCAGTGTTACTGAGGTGTCATTTGCTCACAACTTGGGCCTTCATGGTGACCCACGTCTACGTGTCGGTGGAAGACCACTGTGGGTACGACTTCCCCTGGTCCACGTCTCGCCTGATTCCCTTTGGCGTCTACGGAGGGCCAAGCAAGCATGACGTGCACCACCAGAAACCCAACACCAACTTTGCCCCCCATTTTAGCCACTTGGACAAACTGTTCGGCACACATTCTGATTTCAGTTTTATCAAAACTAAATGAAAGCTCAAATTACGAGAAACACATGAGAGTCACAGCCTACACTTCCTTATGAAGCAGATTGTGTTTATAATTCTCTCTTtaggattttattaaaatgtgcgGTCACAAACATCtcagaaacataaaactaaaagagCATTCGTAAGATTTCTCTAAATTTTGGGATAACAGATGAGAGCTGTGGACATTGGTTGTTGGAGGACATTTTGATGGTTTTATTCTTTTACAGAATACCACAGAAAGCTATTATACAAACTGAATGCTGAAGTGAATTTGTAGAAACTAGTTAACACGCCATAACACCAAAATGCCTGACTAAAAGCGCACTT

Function

symbol description
ch25hl1.2 Predicted to enable C-4 methylsterol oxidase activity and steroid hydroxylase activity. Predicted to be involved in cholesterol metabolic process and sterol biosynthetic process. Predicted to act upstream of or within steroid biosynthetic process. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in gill; intestine; kidney; liver; and spleen. Orthologous to human CH25H (cholesterol 25-hydroxylase).

NR:

description
PREDICTED: cholesterol 25-hydroxylase-like protein 1, member 2

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0016126 sterol biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function

KEGG:

id description
K10223 CH25H; cholesterol 25-hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007241930.3 True 1815 mRNA 0.52 1 39173324 39175138

Neighbor

gene id symbol gene type direction distance location
LOC111194738 LOC104947953,LOC106536897 coding upstream 78517 39092479 ~ 39094807 (+)
LOC111194822 LOC107569781 coding upstream 222200 38946176 ~ 38951124 (+)
LOC111194723 LOC107704663 coding upstream 227420 38944402 ~ 38945904 (+)
LOC103021700 LOC103021700,LOC102310173,LOC102785042,LOC102211940,LOC101470544 coding upstream 1227075 37944201 ~ 37946249 (+)
LOC111194820 celf6 coding upstream 1337424 37589985 ~ 37835900 (+)
tspan3 tspan3,tspan3a,LOC107690355 coding downstream 10084 39185222 ~ 39191405 (+)
pik3c2a pik3c2a coding downstream 96798 39271936 ~ 39337878 (+)
LOC103038446 LOC108443054,LOC108263931,LOC108265089 coding downstream 312628 39487766 ~ 39492076 (+)
LOC111194742 NA coding downstream 639858 39814996 ~ 39820624 (+)
LOC103034226 NA coding downstream 662899 39838037 ~ 39927918 (+)
G163444 NA non-coding upstream 43738 39107787 ~ 39129586 (+)
G163443 NA non-coding upstream 67275 39105805 ~ 39106049 (+)
G163421 NA non-coding upstream 82191 39053394 ~ 39091133 (+)
G163420 NA non-coding upstream 130899 39036870 ~ 39042425 (+)
G163386 NA non-coding upstream 253636 38917939 ~ 38919688 (+)
G163465 NA non-coding downstream 1062 39176200 ~ 39178877 (+)
G163474 NA non-coding downstream 27195 39202333 ~ 39221652 (+)
G163491 NA non-coding downstream 74079 39249217 ~ 39249676 (+)
G163495 LOC107567882 non-coding downstream 82300 39257438 ~ 39263780 (+)
G163504 NA non-coding downstream 190456 39365594 ~ 39371719 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other upstream 1761355 37409992 ~ 37411969 (+)
LOC103046025 hcn4,LOC108263998 other upstream 1820545 37287167 ~ 37352779 (+)
G162964 LOC108431875,LOC108413582 other upstream 2418637 36754185 ~ 36754687 (+)
ccpg1 ccpg1 other upstream 3003579 36132415 ~ 36169745 (+)
pygo1 pygo1 other upstream 3052922 36112042 ~ 36120402 (+)
reln reln other downstream 399951 39575089 ~ 39788454 (+)

Expression


Co-expression Network