LOC103038446 (LOC108443054,LOC108263931,LOC108265089)


Basic Information

Item Value
gene id LOC103038446
gene name LOC108443054,LOC108263931,LOC108265089
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 39487766 ~ 39492076 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007242439.3
CCCTCCTCCAGCAAGAGGACTTAAagagggaggagaagagaagagaggaacaAACAGCTGCTGTACTGATGTTTCAGAGAAGCTTATTCTTCAGTCTTCTCTTTTAGAGGATTATTATTGGATATCTCAGACCGTATCTCTAGCAGtcTGTGATTCCGGCGCTCTGAAGATGCCAAATTGTTTCAGAAATTTCCTGTCTAAGCGCCGCGTTGCTAAAAACCGCCTGGTTACCAAAGACGGACACTGCAACATCGAATATGGAAACGTGAGGTACACCAGCCGCTTAGCCTACTTGCTGGACTTCTGGACCACGTTCGTGGAGATCCGCTGGCGATACATCATTTTATTCTTTGTGGCCTCCTTCACTCTCAGCTGGTTTATCTTTGGTCTCATCTGGTACTGGATTGCTCTTAATAATGGAGATGTTTGGTGGCAAAACCCACCTGCAGACCACAAACCATGTGTATACAACGTCTTCGGCCTCACCACATCCTTCCTCTACTCACTGGAGACCCAGATGACCATCGGTTATGGTATGCGAGTCCTCAGCCCCTACTGCCCCGGAGCTGTGGCCCTCCTCATTATTCAGTCCATTATTGGGTTACTGATCAACTGCTTCTGGTGTGGACTGATCATGGCCAAAATCACCTTGCCCAAGAAAAGAGCCAAGACCATCACCTTCAGCAGAATGGCCGTGATCTGCCCTAAAAACGGCACGCTCTGCCTGCAGATACGTGTAGCCAACCTCCGCAAAACCCTGATGATCGGCAGCCAGATCTACGGCAAGCTGCTAAAGACGACGGTCACGCCCGAAGGCGAGACCATCATCCTGGACCAGGTCAACGTTGATTTCATTGTCGATGCCGGGAAAGACAATCTCTTCTTTATCTGCCCTTTGACTTTGTATCACGTAATCGACAAGATGAGTCCGTTCTTTAACCTGGCTGTGGACACCCTGCTCCAGCAGGACTTTGAGCTGGTGGTGTTCCTGGACGGTACGGACGAGAACACCAGTTCCTCCTGTCAAGTCAGAACGTCCTACATCCCTCAGGAGATCAAGTGGGGCTGCAGGTTCCTCCCGATCATCTCCCGAAGTAAGGAGGGTAAATACTGTGTTGACTTCTCCAATTTTGCGAGAGTGGAGCCTGTACCTACCGCTCACTGCGCCCACTGCTACTACAACGACCAAGGCCACCACCACCTCAGGAACGGCGTAGAAAACCAGGGCTTTGAAGTGATTGAAATCAGCGACCAAGCTCGTGCCACCGAGATGTGACCTTCATTTGTGGTCTATTGCAGTGCCAAAAATCTGCTGTTCAGATTCTCATCTCTTCAGAGACTCTGCTCTTCACTAATTCTGCTCCTTAGAGACTCTGATCTTTAGAAAATCTGCTATTCCGAAACTCATCTTTTAAGAGACTCTGATCTTTAGAAACTTG

Function

NR:

description
PREDICTED: ATP-sensitive inward rectifier potassium channel 1-like

GO: NA

KEGG:

id description
K04995 KCNJ1, KIR1.1; potassium inwardly-rectifying channel subfamily J member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007242439.3 True 1439 mRNA 0.49 2 39487766 39492076

Neighbor

gene id symbol gene type direction distance location
pik3c2a pik3c2a coding upstream 149888 39271936 ~ 39337878 (+)
tspan3 tspan3,tspan3a,LOC107690355 coding upstream 296361 39185222 ~ 39191405 (+)
LOC103046335 ch25hl1.2,LOC108435345,LOC107691130,LOC107725743,LOC107567893,LOC102790067 coding upstream 312628 39173324 ~ 39175138 (+)
LOC111194738 LOC104947953,LOC106536897 coding upstream 392959 39092479 ~ 39094807 (+)
LOC111194822 LOC107569781 coding upstream 536642 38946176 ~ 38951124 (+)
LOC111194742 NA coding downstream 322920 39814996 ~ 39820624 (+)
LOC103034226 NA coding downstream 345961 39838037 ~ 39927918 (+)
LOC103039568 sox9 coding downstream 772587 40264663 ~ 40270386 (+)
LOC103036843 sstr5,LOC108241368,LOC103468864,LOC107083133,LOC106942343,LOC103140984,LOC102219310,LOC106518680 coding downstream 1267199 40759275 ~ 40765548 (+)
LOC111194726 sstr5,sstr2,LOC106601899,LOC101075299,LOC106606408 coding downstream 1415065 40907141 ~ 40910721 (+)
G163587 NA non-coding upstream 59162 39427902 ~ 39428604 (+)
G163504 NA non-coding upstream 116047 39365594 ~ 39371719 (+)
G163495 LOC107567882 non-coding upstream 223986 39257438 ~ 39263780 (+)
G163491 NA non-coding upstream 238090 39249217 ~ 39249676 (+)
G163474 NA non-coding upstream 266114 39202333 ~ 39221652 (+)
G163606 NA non-coding downstream 62242 39554318 ~ 39561345 (+)
G163604 NA non-coding downstream 117406 39609482 ~ 39610032 (+)
G163689 NA non-coding downstream 297758 39789834 ~ 39790057 (+)
G163691 NA non-coding downstream 298289 39790365 ~ 39790787 (+)
G163693 NA non-coding downstream 301536 39793612 ~ 39794019 (+)
G163105 kpyk,LOC103044212,LOC108432067,LOC108264538,LOC106587214 other upstream 2075797 37409992 ~ 37411969 (+)
LOC103046025 hcn4,LOC108263998 other upstream 2134987 37287167 ~ 37352779 (+)
G162964 LOC108431875,LOC108413582 other upstream 2733079 36754185 ~ 36754687 (+)
ccpg1 ccpg1 other upstream 3318021 36132415 ~ 36169745 (+)
pygo1 pygo1 other upstream 3367364 36112042 ~ 36120402 (+)
reln reln other downstream 83013 39575089 ~ 39788454 (+)

Expression


Co-expression Network