LOC103030327 (maf,LOC108428434,LOC107728098,LOC107381304,LOC108274756)


Basic Information

Item Value
gene id LOC103030327
gene name maf,LOC108428434,LOC107728098,LOC107381304,LOC108274756
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 4916228 ~ 4920871 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007243993.2
tgtgttagacagtgtgttggagtgtgtttgtgtgcctaGCCTATACGAGTAGTGAGTAGTAGTACGAGTGTGTGTTCACTTTTTTTCAAGCGcgattttttctttctcaaacAAAAAGCACTCCTGCACGCGCGCGCACGGGGCAAGGCACtctttctgcctgtctgtctgcatgCATGTCTCTGCATGCTAAAGTGGACGACGTATTTTAGACGTTTAGAGCTTTTGTTGTCGGAGTTTTTGGCTCTTCCGTTACTTTTTACGCACCATCTTTTCACTCCGCGTCCAGCGTCCACCCGTCTTTCTCCGCCGCGTCACGATGCGCTCtggtgaagaagacaaagagaaGAAGACagcagaggcagcagcagcagctgagatGTTTTGAGAGAAGAGAAAGTTTCAGTGTATTCCTCTTCGAGAccagagaaggaggaggaggaggaggagggggcagaagaagaaaaaaaggagagagcaGGAACCAGAAGGGAATGAATCTGTGCGTAAAGGAGAAAAAAGTGCGCGTAATCTGGAGGAATTAGGAAATACGAGGTTCCATAAGACTTCCATCGTCCaagatcagcagcagcagcagcctggacTTTTCAGGGGAAGGAGGAACCTCGCggttctcacactctctccttCTTCAGCTCTTCCTATCtatcttttaatttaatttttgaaTTGTCCTCTTTGGAGAAGAGCACCAGAACAACCATCAAGCTGGCTCACTCTCTTCTCAGCCAAGCCGTCCCGCCAGCCGCGCTTCACCCTCTTTGGAGGACTGTCAACAGCAAGAGGATGGCATCAGAGCTGGCGATGAGCAGCAGCTCCGACCTGCCCACCAGTCCCCTGGCCATGGAATATGTTAATGACTTCGATCTGATGAAGTTTGAGGTGAAGAAAGAGCCCGTGGAGCCCGAGCGCGGCAGCTTGAGCCACCAGTGCAGCCGCCTGCTCGCCGGGGGCTCCGTGTCTTCCACGCCGATGAGCACACCGTGCAGCTCGGTGCCTCCCTCGCCGAGCTTCTCGGCGCCCAGCCCGGGCTCCGGGAGCGAGCACAAGAGCCACTTGGAGGACTTTTACTGGATGACGGGCTACCAGCAagcccagcagcagcaggcgcaagcccagcagcagcagcagcaagcagctcagcagcagcagcaagcagcccagcagcagcagctcaaccCGGAGGCGCTGGGCTTCAGCCCCGAGGACGCGGTGGAGGCGCTGATCAGCAGCGCGCACCAGCTCCAGCCCTTTGACAGCTATGCCAGGGCGCAGCAGTTCGCCAGCGCGGCCGGCCCGGGAGGCGCCGTGGCCGGGGACGACATGGGCTCAGCCGCCGCCGTGGTCTCGGCCGTGATCGCCGCCGCTGCAGCGCAGAACGGTGCccctcaccaccaccacaaccatcaccaccaccaccaccacccgaTGCACCACCACGCGTCCTCCAGCAACAGCCCCACCGCCGCCGCtgcagctgcaggaggaggtggaggaggacaccaccaacaccaccaacaacagcaacacagccaccaccaccagcagcagccagGCCAGGAGGACCAAGCCGGCTCCCTCCACgcgcaccaccaccaccagcaccaccaccaccaccagcacggCTCCGACGACCGCTTCTCGGACGAGCAGCTCGTCACCATGTCCGTGCGCGAGCTCAACCGGCAGCTCCGCGGCGTCAGCAAGGAGGAGGTGATCCGGCTGAAGCAGAAGCGCCGCACGCTGAAGAACCGCGGCTACGCGCAGTCCTGCCGCTTCAAGCGCGTCCAGCAGCGGCACGTCCTCGAGGGCGAGAAGACGCAGCTGCTGCAGCAGGTGGACCACCTCAAGCAGGAGATCTCGCGCCTGCTGCGCGAGCGAGACGCCTACAAGGAGAAGTACGAGAAGCTGGTGGGTGGCGGCGGCGGTGGGGCTGGAGGTGGAGGGGGCTTCAGGGAGAGCGGAGCGAGCTCCAGCAGCGACAACAACCCCTCGTCTCCAGAGTTTTTCATGTGAGTCAGTCCTGCTGCACACCACCAagtctgaaagagagagagcgagagagagcgcgagagagtgagagagagtgaaagaaatagagagaaaaagagaaagatactttctttaaagtagcagattttatattttttattttttgatttttgtttttttctcctgatCAGTACAGGCCTGGCAGTCTGTctgttgttaatattattattattattaatattattattattattagtgttgttatatatttttctgtttgtgtggAGATGGAGAGACTCaacttttacaatatatatattctttttattttttatctatatatttccCTTCCCAACAAATGCAAAAACCCACCCAAAGCCAAGCCATCCTCGCTTAAACCCACACACAAACttttttgagtttgagttttttttttttttttaagtcatttccTTTTAATTTTGAAACTCTTGAAAACTTGCCGACTTGCagtgttttcttcatttttttgaatgggattgctgtttttattccctcttttttgttgttctttgttttaaaaaaagcatgcaTCATCCACATGCATCAATGGTCAAGCAATGCTcatccttttttgttttctttttgcatcACCATTTTTGTCCTTGCTTTAAATTCCcaacccaagaaaaaaaaaaactcccccaAAATTCAGCTCCCCTTACTTTGTTTCTGTGGCACTTTTTCCTTTTcgttttttgttggtttgttttccCCTGAAGTTCCAAAGAATCACACTTCTAAGGACCTGCAGCTTCCCCCATCACTTTTGATCTTCCCGAGATCATGCCAATCATCTCCTCAATCATCCCGATTGATCATCTCATGAGTCCTGCTTGCTTGCTGTTTTGTTCTCTGTTTAACGAAAAGAAGAAAacgttaaaaaaaagacaagaaaatgaCTGTTTACGAACAACTTTCAAAGACAATGCTTTAATacgaaaatgaaaaaaagaaaagaaacaaagagcagagagacagaacgagacaaaacgagagagagagagacaatatcgtattcttattattatcatcGCCTGCATGCTGGACATGTACGGTTTTCTTggttttctttttccttattttgtgttttttgtttttttattgtttattttgcttgAGAACTGAACAGTTTGTACTCGGATAACTCCAGCATGGCATTCATCCTCTTCCTTTATTTGCCGGCTCACTTTTTTGCCTGGAATATACGCGCAAAAAAGTGAAAGAGCATCCCTCAAACCAACCtataccaaccaaccaaccaatcatcccaccctgctgaaaaaaagaaggagagTTTAAAACAGGCTGAAACTGGAAGCGATGTTTGAAGGGACACGGACTGTGCTAAAGAGGAGCTCCGTCTCCGGGACTTTTAAAATTGCTTTAAAGTTACTTTGTTGGCTCTTTACTCTTACTTTAccactgtgtgtaataaagcAAACAACGTGTTTTATATGTGAAGCATAAGAACAGTTGTGTTGTTATCTGTGAGATCTGAGTTTGACGGTCAGTGTAAGCTATGCTCCAGgttgataatgataatgataataacgaTGGTGTTGTTTATGAAGATGAAGATAAAGATTCTGATGCTGAAGATATACAATCTAAGATATGAGATATGACGGTGGTTTTTAAGGGTTTAGACTTTCGGGGTTCACATCCTATGCACTTGCCCATACAATTGACAATTGATTCCCTGATTCCTGATTCTATAGTGTTAACCAATATGTTAGCCTATGCTGGAAGGACCCAAAGCGTGTACAtgtctgtgtgtataagtgtgtataataTTACTACACAGCAGCAGGAGTGTTTGTTAGGATGCGGACTGGAtgccagcttttttttttttagcagcatGTGCTTGCCATGAACACAGCAGCAGTTTGACAGATGTAGCCCCCCCTCCTCTCTTCTTCCAGCCTACCActgactgtattaaaaaaataccaaaGTATTAAAAGCAAAAGAAGAACTGGGAAACGCTtgggagcgttttttttttttgcaaaatacagatcttaaacttaaacttatttGGACTGAGTTGCACTAAAATGTAGCCTGTAGCTAAtcacacagtatatatatatataatatatatatatatataaatagatttaTATATGTATCACACGGTGGATTCTTATCTTAGAACGCTAATTTAAGATTGAGACATATCTCATGGCATTGCTGGAGAATTTATGAATGCAatcgtattattattattattacgttACATTGTCAAAGCAGGACTagttcctttcttttctttttttgttgtggaAAGACGGATTCATTATTTACGAggcaataatataataatcaataatgtcTGGACATTGTTTTATAGTCAGGGATTGAAACCCTGCttgtataaaaatgaaaaaaatggggATATACCATTcatcaataattttttttaagtatgttaattaaaaaatttctcatatatatataaaaatatatatattttgctgtgCAAAATTATTTCACTCACTAACCATATGTGATGTTCATATGTGCTTATCTTCATTTCATACGATTATATGATAtgcaataaaaatgcaaattggGCTTCATAAA

Function

symbol description
maf Enables identical protein binding activity and sequence-specific double-stranded DNA binding activity. Predicted to be involved in lens fiber cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including regulation of chondrocyte differentiation; regulation of transcription by RNA polymerase II; and sensory organ development. Predicted to be located in cytoplasm. Predicted to be part of chromatin. Predicted to be active in nucleus. Implicated in Ayme-Gripp syndrome; cataract; and cataract 21 multiple types.

NR:

description
PREDICTED: transcription factor Maf-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007243993.2 True 4644 mRNA 0.46 1 4916228 4920871

Neighbor

gene id symbol gene type direction distance location
LOC103037478 LOC108434021 coding upstream 177823 4678203 ~ 4738405 (+)
LOC103029469 spon1,spon1a,LOC107741890 coding upstream 405688 4296319 ~ 4510540 (+)
LOC103036857 LOC108433503,LOC108264854 coding upstream 792748 4008326 ~ 4123480 (+)
LOC103036562 hipk3 coding upstream 916766 3977752 ~ 3999462 (+)
LOC103025504 LOC108425960,LOC108266765 coding upstream 1017013 3858506 ~ 3899215 (+)
LOC103036856 LOC103036856 coding downstream 600815 5521686 ~ 5524043 (+)
cdyl2 cdyl2 coding downstream 615863 5536734 ~ 5597788 (+)
cenpn cenpn coding downstream 692090 5612961 ~ 5619291 (+)
atmin atmin coding downstream 700349 5621220 ~ 5630190 (+)
LOC103034771 LOC108442590 coding downstream 718377 5639248 ~ 5641113 (+)
G156153 NA non-coding upstream 27227 4888596 ~ 4889001 (+)
G156151 NA non-coding upstream 47873 4868090 ~ 4868355 (+)
G156121 NA non-coding upstream 268205 4647628 ~ 4648023 (+)
G156107 NA non-coding upstream 365361 4550240 ~ 4550867 (+)
G156095 NA non-coding upstream 402523 4512820 ~ 4513705 (+)
G156157 NA non-coding downstream 32203 4953074 ~ 4953274 (+)
G156165 NA non-coding downstream 90955 5011826 ~ 5012075 (+)
G156184 NA non-coding downstream 200133 5121004 ~ 5121206 (+)
G156189 NA non-coding downstream 261663 5182534 ~ 5183300 (+)
G156190 NA non-coding downstream 290084 5210955 ~ 5211434 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 278938 4575668 ~ 4637290 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other upstream 984065 3929331 ~ 3932163 (+)
LOC111194753 NA other upstream 1301737 3611018 ~ 3614491 (+)
G155776 NA other upstream 2161116 2738361 ~ 2755112 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other upstream 3692878 1203741 ~ 1223350 (+)
G156188 NA other downstream 236283 5157154 ~ 5157400 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other downstream 2172636 7093507 ~ 7171625 (+)
LOC111194759 NA other downstream 2451505 7372376 ~ 7431568 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other downstream 2679696 7600567 ~ 7606668 (+)
G157055 NA other downstream 3649059 8569930 ~ 8570877 (+)

Expression


Co-expression Network