LOC103030962 (ds22a,LOC108434600,LOC105892932,LOC106562285)


Basic Information

Item Value
gene id LOC103030962
gene name ds22a,LOC108434600,LOC105892932,LOC106562285
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 6067215 ~ 6095668 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007243995.3
GCTCAATATAATCATTTTTAGCTGAAGTCCGGAAGCTGGAGTGAGGCTTAAAGGGCAGATCAGAAAGGAGGATACCCTTCATAACCCTAGAGTGTAGATTTTATATCAGTATATATCAGTATAAGGCGTTTTTACTAAGTTTAGTTTAGAAATGCGACAGCGCCTGTAATGTTGTTGTATGCTAACTAAGGTGATCTGTGGGCTAGCCTTCATGTGAAGCAGAGGGAAAAACGTCAACACCGAGAATAGTTGTTGATGTGAAAAGTCTCCACCACAGTCATGGGGAACGGAATGAATAAGGTCATTGATGGCCTGTATTTAGGAAACGTACGAGACTCAGAGAACAGAGAAAGCCTGTCTCAGAAAGGGATTACCCACATCCTCTCTGTGTACAACAATGCCAAGCCTGTGCTGGAGGACATGACCTACCTTTGCATTCATGCAGCAGATGCCTCTAATCAGAACTTATTACAGCATTTCAAAGAGTGTATCCGGTTTATTCACGAGTGCCGATTGAATGGTGGAGCCTGTCTGGTTCACTGCCTTGCTGGAGTGTCCCGCAGTACTACAATGGTAGTGGCCTATCTGATGACTGTCACTAATTATGGCTGGGAGGACTGTCTGTCTGCGGTTAAGGCTGTGCGCTCCTTTGTAGGCCCTAACTATGGCttccagcagcagctgcagcagtacCAGATGACCCAAGTCTCAGAGtatcgtACTTGGCTGCGAATGACCTACAGATCCAGTACATTCAGAGATCAGGATCAGGTGGCAGCCTTGTTGGTCCAGTATGCAGAACAGCAGGCTCAGGAACGACAGAGACGAGGAAATCACGACTGGATGAACCAGTCCACCAGCGTCTACTCTGTGCCATATGACCGTTACAGCAGCTCAGGCTTTAATAGATGAGTGCTTTTTTCAGCACCCCATCTACACCCATCTACACACACCCCAAACCCCACAACCCATTAAGACCCCTCAAAAACTCATCCCTGTCACTTTACCTTACTAATCACTCAGACTTATAATGGTTGCTGCTAGGGGTACACAAAAGTCATAGTTTGGTTTACATTGTGTTTTAGACATCATGGTTTAGTTCAAGTACGGTATAAAGCACaaaacaatgacaaaaaaaatatataagactattttttatttatttaatataaacagaCTTACACTTGTGTAAGTTATAGTCGGCTCCGTCTAGTGCTGTATAATGCCCCACTCAGGTAGTTATAACAgatattatgtttattaaaatataatcaataaaataagatGCTAAAGCCATTGTATATGTCaaatatttgttcattttcCATCATTTTAAATCCACAGGTAAGAGCAGTGACagataaagtttaaagaaaaatgtgtgaGTCACTCTCTCTATATGTGGTAACAAGAGGCATAGAGAATAGAGAGGGAAAAGGAACAGGAGGGGTACAGCAACACTATCTATAATCTATCTAAACCACTACAGTTAACACACAGTGAAATGCCATTCCAATAGCTTACAGTTTATGGAATTGCTGTATTTACCCCAATAGCAACGTATCACCCTGAACCATGACTCCTGTATCATGCTAGTTCACTACAAATATACATACCCTTACACCTCTAATTGCTGCTTACCTGTAATTTAATCTACATCAAGCTTAGCTGCTTAAACTAGAATCAGCACTGCCACTTGCACTAGCTCTTAGTTTAAGCCTTTAAATACACTGGCCTGAAATACCATATAATTTAACCCTTGAATATAAAAGCAGAGAACATCCAAACCGTTTGCTTTAAAGTTAGTAGATCCAGGAAGACTACCTTAAAAAAGCCAATATGCAACTTTGGGTGATTAGTGACTGAATTTATAATGAGtgttttattggtttgttttggttttccCTTTTTGTGCACAAGGACGAGCGATTGAGAGACTgacttgttgtttttaaagaagCAATGGAACCCAGCCCTGTTGTTGAACCTAAAATGGTACAAGCTCTGTTGTCAGAGtacactgtaaatgattcaCACCTTTATAGTACAGAAATTTGTACTTCTGTTCTGTGCAAATCTTATGTTATTAAACACTATTTATGAACCGTA

Function

NR:

description
PREDICTED: dual specificity protein phosphatase 22-A-like isoform X2

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0046330 positive regulation of JNK cascade biological_process
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007243995.3 True 2109 mRNA 0.40 7 6067215 6095668

Neighbor

gene id symbol gene type direction distance location
LOC103031281 cox4i1,LOC103031281,LOC108412231,LOC107663352,LOC107731261,LOC107565335,LOC107572641 coding upstream 1682 6063252 ~ 6065533 (+)
gse1 gse1,LOC107565336,LOC107719882,LOC107661366 coding upstream 24712 5703096 ~ 6042503 (+)
LOC103034771 LOC108442590 coding upstream 426102 5639248 ~ 5641113 (+)
atmin atmin coding upstream 437025 5621220 ~ 5630190 (+)
cenpn cenpn coding upstream 447924 5612961 ~ 5619291 (+)
irf8 irf8 coding downstream 5085 6100753 ~ 6111006 (+)
foxf1 foxf1 coding downstream 206180 6301848 ~ 6305572 (+)
dbndd1 dbndd1,dbnd1,LOC106562278 coding downstream 229153 6324821 ~ 6363149 (+)
gas8 gas8,LOC108276428 coding downstream 387151 6482819 ~ 6488287 (+)
LOC103042367 LOC108435537,LOC105906449,LOC101169526 coding downstream 635502 6731170 ~ 6759468 (+)
G156326 emc8,LOC106587369 non-coding upstream 5218 6056669 ~ 6061997 (+)
G156331 NA non-coding upstream 14833 6050480 ~ 6052382 (+)
G156233 NA non-coding upstream 418641 5645881 ~ 5648574 (+)
G156225 NA non-coding upstream 455942 5602332 ~ 5611273 (+)
G156215 NA non-coding upstream 465556 5601105 ~ 5601659 (+)
G156340 NA non-coding downstream 21477 6117145 ~ 6117589 (+)
G156395 NA non-coding downstream 211057 6306725 ~ 6307420 (+)
G156397 NA non-coding downstream 212565 6308233 ~ 6308561 (+)
G156399 NA non-coding downstream 213704 6309372 ~ 6309620 (+)
G156402 NA non-coding downstream 218284 6313952 ~ 6317024 (+)
G156188 NA other upstream 909815 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 1429925 4575668 ~ 4637290 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other upstream 2135052 3929331 ~ 3932163 (+)
LOC111194753 NA other upstream 2452724 3611018 ~ 3614491 (+)
G155776 NA other upstream 3312103 2738361 ~ 2755112 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other downstream 997839 7093507 ~ 7171625 (+)
LOC111194759 NA other downstream 1276708 7372376 ~ 7431568 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other downstream 1504899 7600567 ~ 7606668 (+)
G157055 NA other downstream 2474262 8569930 ~ 8570877 (+)
G157383 NA other downstream 3845161 9940829 ~ 9941805 (+)

Expression


Co-expression Network