LOC103031281 (cox4i1,LOC103031281,LOC108412231,LOC107663352,LOC107731261,LOC107565335,LOC107572641)


Basic Information

Item Value
gene id LOC103031281
gene name cox4i1,LOC103031281,LOC108412231,LOC107663352,LOC107731261,LOC107565335,LOC107572641
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 6063252 ~ 6065533 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007243996.3
CTCTTATTTATGTGCTCTGTGAATGAGTGCGCGCTCCCGGTGTTTCCTGCGCGTGTCCTCTTTCATTCTTTACGAGCAGCGGCCGAGAGCGGAGAGAATGCTGGCTACCAGGGCATTGCGTTTTGTTGGGCAACGCGCCTTGTCAACTTCAGTGTGCCTGCGTGGTGGACATGgtgttgCCAAGGTTGAGGACTACTCTCTTCCAGCATATTTTGACCGACGGGAGATTCCCCTCCCTGAGATCAAATATGTCCAGGAGTTGAGCTCAGTACAGCAGTCCCTGAAGGAAAAGGAGAAGGGTTCCTGGACTGCATTGTCTGTTGATGAGAAAGTTGCATTGTACCGCATCAGCTTCAAGGAGAGCTTTGCTGAAATGAACAAGGCTACAGGGGAATGGAAGTCTGTGGTAGCTGGAATTTTGTTCTTCCTTGGCTTCACTGGTGTTGTTGTGCTGTGGCAGAGGAAATACGTCTATGGAGAGCTTCCTCACACCTTTGACCCCGAgtacaaagaaaaagagatcCAGAGAATGCTTGACATGAGGATCAACCCTATTGAGGGATTTTCAGCTAAATGGGACTATGAAAACAAGGCCTGGAAGAAATAAGTTCATGTTCATCTCAGTCTTTGGACCATGTTACGCAAAATCTTGCAAAGCAGGCAACATGGAAGTCAGAAGAAAtgtctgtatttatgttttgtctGCAGTACCTCAGTGAATGCGATTTGGAAGACCACTTCCTCTTAAGgttattgtttaaaatatacaaaataaaattccAGTGTCTACCATGCCA

Function

symbol description
cox4i1 Predicted to enable cytochrome-c oxidase activity. Acts upstream of or within response to hypoxia. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be part of mitochondrial respiratory chain complex IV. Is expressed in several structures, including adaxial cell; brain; digestive system; eye; and muscle. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Orthologous to several human genes including COX4I1 (cytochrome c oxidase subunit 4I1).

NR:

description
cytochrome c oxidase subunit 4 isoform 1, mitochondrial

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0001666 response to hypoxia biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG:

id description
K02263 COX4; cytochrome c oxidase subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007243996.3 True 797 mRNA 0.46 5 6063252 6065533

Neighbor

gene id symbol gene type direction distance location
gse1 gse1,LOC107565336,LOC107719882,LOC107661366 coding upstream 20749 5703096 ~ 6042503 (+)
LOC103034771 LOC108442590 coding upstream 422139 5639248 ~ 5641113 (+)
atmin atmin coding upstream 433062 5621220 ~ 5630190 (+)
cenpn cenpn coding upstream 443961 5612961 ~ 5619291 (+)
cdyl2 cdyl2 coding upstream 465464 5536734 ~ 5597788 (+)
LOC103030962 ds22a,LOC108434600,LOC105892932,LOC106562285 coding downstream 1682 6067215 ~ 6095668 (+)
irf8 irf8 coding downstream 35220 6100753 ~ 6111006 (+)
foxf1 foxf1 coding downstream 236315 6301848 ~ 6305572 (+)
dbndd1 dbndd1,dbnd1,LOC106562278 coding downstream 259288 6324821 ~ 6363149 (+)
gas8 gas8,LOC108276428 coding downstream 417286 6482819 ~ 6488287 (+)
G156326 emc8,LOC106587369 non-coding upstream 1255 6056669 ~ 6061997 (+)
G156331 NA non-coding upstream 10870 6050480 ~ 6052382 (+)
G156233 NA non-coding upstream 414678 5645881 ~ 5648574 (+)
G156225 NA non-coding upstream 451979 5602332 ~ 5611273 (+)
G156215 NA non-coding upstream 461593 5601105 ~ 5601659 (+)
G156340 NA non-coding downstream 51612 6117145 ~ 6117589 (+)
G156395 NA non-coding downstream 241192 6306725 ~ 6307420 (+)
G156397 NA non-coding downstream 242700 6308233 ~ 6308561 (+)
G156399 NA non-coding downstream 243839 6309372 ~ 6309620 (+)
G156402 NA non-coding downstream 248419 6313952 ~ 6317024 (+)
G156188 NA other upstream 905852 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 1425962 4575668 ~ 4637290 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other upstream 2131089 3929331 ~ 3932163 (+)
LOC111194753 NA other upstream 2448761 3611018 ~ 3614491 (+)
G155776 NA other upstream 3308140 2738361 ~ 2755112 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other downstream 1027974 7093507 ~ 7171625 (+)
LOC111194759 NA other downstream 1306843 7372376 ~ 7431568 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other downstream 1535034 7600567 ~ 7606668 (+)
G157055 NA other downstream 2504397 8569930 ~ 8570877 (+)
G157383 NA other downstream 3875296 9940829 ~ 9941805 (+)

Expression


Co-expression Network