atmin (atmin)


Basic Information

Item Value
gene id atmin
gene name atmin
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 5621220 ~ 5630190 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244010.3
tttaaaggtGCGCTGCGCGCTGCTAATCGTTGTAGCGCTGAAACATGGCCGCCGCCCCCGGAGCGGACAGCTCGGGTCCGCGTCCCAGCAGCGCCCCCGAGGAGCCGTCGGGCCAGCCCAGGGAGATCATCCGGCCCTCCATCACGGAGCTCACCAAGGAGGTGCGGACCAACATCCTCTGCACGGTGGAGGGATGCGGCAAGATCCTGCCCAACAGCCCGGCGCTCAACATGCACCTGGTGAAGTCCCACAGAGTGAAGgAGGGTCTTGTGAACCCTACTGTGAGGAAGGATATAAAAGGTTCACAGAAGCTCTACTGTTGTCCAATAGAGGGCTGTCCAAGAGGACCAAACAGACCCTTCTCCCAGTTTGCCCTGGTTAAGCAGCATTTTATGAAGATGCATGCAGAGAAAAAGCACAAATGTGTGAAGTGCAGCAATGGGTACAGCACAGAATGGGACCTCAGGAGGCATACAGAAGACTGTGGAAGGACCTACAGCTGTACCTGTGGTTGTCCGTATGCAAGCAGGGCTGCACTCTTGTCACATATCTACAGGACAGGCCATGAGGTTCCCAAAGAACACCGATATCCACcagtgaagaaaagaaaaagggagagactGTCAAGCAGCACAACGAAAGTGAGGCCCAACGAACAAACTTACGAAATGGCTGAAGGAGCAGTCCCTACAGAAGGAGCTTCTCAAACTCCTGATTCACCACGACACATCCCCATTCACTcaaaaaatgttcaaaagcTTCTCCTGCCCAAGCCTAAAGTGGCTTTGGTCAACGTCCCTGTGATGCAGCTCGCACACCTGCCTGTTCTGCTCCCCTCAGCCGAGAGCAGTGCCTTGAGGTCTGTGCTCTTGGCATTAGATGTGCAGGGCTCCGTAAGCACTGTTCACCTGTTGCCTCAGTCACTTGGGGCAATGGTTCCTGCTTTGAACACTAAGACTGTAAGTTTCAGAGACACCATGCCTGCTTCAAGGTCCAGCCTGGATGCCATCAGCACAGGGATTCAAGTCAACCTAGAGAGTCTGGTCTCAGTAGGCGAGTCAGGTAACGACTTGGGATCTAGAAGTAAAAGCACCTCGACAAACATTCAGACTGATACCTCGTACCTCAGCAAGGGATCTGTTGGAGGAGTCAGCATCCCCCCCATAAGTGAGGCCTCAGTTTCTTCTTGCTCTCAAACTGACATTAGCGTCAGTGCTCAGATCCAGCTACCCATCAGCGTCCAAACCCAGACGTTCCCCTTAAAAGCCAGGGTCACGTCGTCCATAGGGGCGCAAACAGACACTTTCAGTCAACtgcctttttcttcttttaacaTAACAAGAGAAACTCAAACAAGCTGCTGCACGGCAGCGCCAATGACTAGAACACAGATGGACCAAGCTATAATGTGCACAGACCTTTTTGACACTGATATGCTGTGTAGTGTCTCTACACAGACCGCAGTACCTGATGGACCTTTCGGTACAAATGGACTTGATGACGAAGATCCCATGGGTACAGAAGCAGAGCTCTTCGAGGACAGATCGGCTCAGTCCTTGTGCTTTGGATCCCAGAGGGACATCTTGCACCAGAACACGGTAGCCGACAACCAGACGCAGACCATGAATCTCTTCAGTGACCTTGAGAACATTCTTTCTGACAGCATGGCAGCTGGAACGCCGGGGTGCGGATCAAGCCTGGTTCCAGTGCAAGAGCAGCATACTGGaattgactttgactttgaggaCTTCCTCAATGCAACCCATATCCAGACTCAGACTGACGAGAGTGCGTTGGGCGGCCTTAACTCAGAGACCCCTTTGGAGCTTCTCGACATTGAGACGCAAACTGATTTCTTGCTTCTTGGTGACAGCCACCAAAGTGATGTCAGCACAAGGGATCAATCGTCAAATGATCTGGAGCTGGAAATGTTTGATACCCAAACCCAGACAGATCTAAACTTCCTTCTTGACCATGGTGGCCATATGCCCCTGGGCAGCATCCTCAGACACTCCAGCTTCAATATGAGCACAGAGTCCTCGGACACAGAGACCCAGACTGATACCAGGCCACTggctcctcatcctcctcctgcTTCTCCTGCTTTGCCCATGTCTTGTTCCCATGAAGGTCAGGTCAGGCTAAGTAGTACAGAAACTCAGACGGTCTCAAGCTCTTCTAGTCTGGGCCAACTCTTTCTAACTAGCAACGAGACTCAGACGGTCATGGATGATTTCCTGTCTGCAGACTTGGCTTGGAACATGGAGTCCCATTTCAGCTCTGTTGAAACCCAAACCAGTGAAGACCTCTTCTCTCTGTTTCAACACTCCGAGAAACCCAACAGCTGAGCTCCCTTGGCCGTTTCGGCTCCCCTGCGGCCGGTGCGGTTTGGGCTACGTTCTGAAAGGAGCTGTGTCTGGTGACTGTTTCACCCAGACAGGCTGAGGGCCAGCAGATAGAGTTCTCCGAAACACTCATCACCGTTAAGACAAGACCCGCTCTGTCTGGCAGGACCTGTGACAATGTGGCGCTTTTAAGAGCTTGCTTGGTAGTAGTCCTTCAGCATCTCAAGTCATTCCATGATGAGTAATGTCTGTCAAAAAACTTGCTATAAGTCGCTATTCCAAGTACGTAGACGTTTAGCTGCACTTTATCGTTCGACTGTCGTTAGTTCAGACCACTCTTCAGCGTGATACCTTATTACGTTTTATTTGCACATTGTTGTCGTACTCTAATTTATCAGAGAGCTTTGTTTACTCATTAGTCCATTAGTTCATTGACCTCTCAGTAGGAGAGAATGTACTGTATAAGTATAGGTGGTATGATGACGGTGctactagtagtagtaatatttcGGTGTGGCGCAAATCTAACAGTTAGAAAATGTACATTCGTTCAGTACCACAGCATATCTTGTGAAATCAATAGGCTGTTCTGGATTGATATGGCTTCCGTGGTTTGTGAGggcctttttttgtttgttttttttcttattttttttgccttggtTGTTAGTCTTCTGTCTGTGCAAAATTTATGTTACGTGTCCAATAGTCTAGACTCTAAACTCAAGAAAACTGTCACTGTGAGTAAACTGTGCTCTTGGTTCACTACAGGTCATGCAGATAATTTGTATTGActgttacagtatattacagatttattattattattattattattattattattattagcattaatTAATCACACTCTTTTAAACATCTGTGAATTAGGTTCTCCTGAAGGATGCCTATTTATGCATGTTACAAATGTTAAACATATGTTTCCTTTAACAGTTGAACTCAGTTAATGGTCTTATGCTATGATTTGCATTCTGTACTGTGAGTAATTTAATTAACATGCAAATCACAATTGTTTACAGTAAACTGAAACCTTTAATATTTATCGGGCGCATGTATTGTTTCCACTGAAtgtgtatttagtcttcttttttaaagcattgtttATTTTGAATTGATTTATTCATGTTTGGCTTTTTGTTGGTGCCTTAATTTAAGTGTTAAGTAAAAAGTGACCATGTGTACATTTTGATGATGTAAAAGTATGGTGCACCGCTGCTTTAATATTAGGACACAtgtcttctgtttatttttaattctatttgtattttttttttttcgtttttggtTCCATTTTCTTAACTATACAATATTAATTGTATAATCTTCTgtgttcattatttatttaagttgttTATTCACTATATTGCACGGAAACCTGTTGCCCGCCTTAGACTCATATTATTTTTCAGTATGTGTAAGTACTTGTTCTTGTACTAGTATGCTTTGCCATGTTTTGGCCAGTATGTCCTGGCCATATATCTCTAGATTTGACTTTCTCTAGCTGCAGAATGTAATTGACACTGTGCCCATTTATGCGAGCTCTCCTCAGCATTGTAACCAAAAGGTTTTacgtatagttttttttttttttttttctccttcacgCTCAACCAATGCAGGCATTTACATTCAACCAGTGTATCTGTTAACATAAATAGAGCTGCCAATAGAGCATCCAAACTGATATGCTATTATACTATTTCTAGAACTTGGCTAAGATGCTAGCAGGAAAAACAAATACGTATTGCTATAGATTACTTGAATTTTGTCAACTTACACTCTGGTTCCTAGTAGAGAGTGAGTGCATGCAGTCTTGTTTGTGCCAAGAACGTGTCCCTTAAGTTGATTTCAGTTACTTCAGGCGATTATCGGAGATATGTCTTAAGttatgtgcatttttttaaggGTTTGGTAGGAGCTACCAGCTTAACCCCGTCAGTGTTCTTCTGTTGTTTAGGCTATGCTGCAGCAGATGCTCAAAATAAAGTGCTATTGAGAAAATTG

Function

symbol description
atmin Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and transcription cis-regulatory region binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ATMIN (ATM interactor).

NR:

description
PREDICTED: ATM interactor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244010.3 True 4370 mRNA 0.45 4 5621220 5630190

Neighbor

gene id symbol gene type direction distance location
cenpn cenpn coding upstream 1929 5612961 ~ 5619291 (+)
cdyl2 cdyl2 coding upstream 23432 5536734 ~ 5597788 (+)
LOC103036856 LOC103036856 coding upstream 97177 5521686 ~ 5524043 (+)
LOC103030327 maf,LOC108428434,LOC107728098,LOC107381304,LOC108274756 coding upstream 700349 4916228 ~ 4920871 (+)
LOC103037478 LOC108434021 coding upstream 882815 4678203 ~ 4738405 (+)
LOC103034771 LOC108442590 coding downstream 9058 5639248 ~ 5641113 (+)
gse1 gse1,LOC107565336,LOC107719882,LOC107661366 coding downstream 72906 5703096 ~ 6042503 (+)
LOC103031281 cox4i1,LOC103031281,LOC108412231,LOC107663352,LOC107731261,LOC107565335,LOC107572641 coding downstream 433062 6063252 ~ 6065533 (+)
LOC103030962 ds22a,LOC108434600,LOC105892932,LOC106562285 coding downstream 437025 6067215 ~ 6095668 (+)
irf8 irf8 coding downstream 470563 6100753 ~ 6111006 (+)
G156225 NA non-coding upstream 9947 5602332 ~ 5611273 (+)
G156215 NA non-coding upstream 19561 5601105 ~ 5601659 (+)
G156209 NA non-coding upstream 136175 5484764 ~ 5485045 (+)
G156204 NA non-coding upstream 179221 5441738 ~ 5441999 (+)
G156202 NA non-coding upstream 294249 5326762 ~ 5326971 (+)
G156233 NA non-coding downstream 15691 5645881 ~ 5648574 (+)
G156331 NA non-coding downstream 420290 6050480 ~ 6052382 (+)
G156326 emc8,LOC106587369 non-coding downstream 426479 6056669 ~ 6061997 (+)
G156340 NA non-coding downstream 486955 6117145 ~ 6117589 (+)
G156395 NA non-coding downstream 676535 6306725 ~ 6307420 (+)
G156188 NA other upstream 463820 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 983930 4575668 ~ 4637290 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other upstream 1689057 3929331 ~ 3932163 (+)
LOC111194753 NA other upstream 2006729 3611018 ~ 3614491 (+)
G155776 NA other upstream 2866108 2738361 ~ 2755112 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other downstream 1463317 7093507 ~ 7171625 (+)
LOC111194759 NA other downstream 1742186 7372376 ~ 7431568 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other downstream 1970377 7600567 ~ 7606668 (+)
G157055 NA other downstream 2939740 8569930 ~ 8570877 (+)
G157383 NA other downstream 4310639 9940829 ~ 9941805 (+)

Expression


Co-expression Network