cenpn (cenpn)


Basic Information

Item Value
gene id cenpn
gene name cenpn
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 5612961 ~ 5619291 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244011.2
AACGGAGAGTCCGGCTCTCTGCGCTGATTCAGGATCGGCCGTTAAACAGAGTTTTACAGCGGCCGGTTGAATTGTTTGGCGGTTGGGTAGGGGTTGTTGTTGCTGTAGCGGGCGGAGTGATTCTGTAGTTATAAAggtgtttatagtgttttagGGGGGATTGTAGAGCAGGTTTATGAGTTAAGGGGGTTTTGTAGGGGGTTAGAGGTAGGTTAATTCAGTAGGAGATGGATGAACAGGCGAGATCTATTCTACAGCGGATTATCAAGAAAACTCCCAGCAAGAGATTGGAGACTATTATCCGATCCTGGAACTGTTTATCTGAGGATCAGCTGCACTCCCTGAATTACTCCCAACCCAAATGGCTGTTCCTGGAAAACCTCGTATCCAGATGTGAGgaaaacaGGGTGAGCTTAAAAGATGTGACGAAACTGGAGATGATCTATCACATACACAATCCAAATCAAGGAACCTGGCATGCCTGCCAGCTATTTCAAGCAGAAGATGATGCGCTGTCTGTGCATTTCACACAGTTTCGGGAGAGCTTTATCGCCCACCTGGAGGATGTTGTTCAGCATGTCTCTGTTGGAATGAAGAAACTTGAGGATGGTGCCATTTGGGTCCGAATCGCGTGGGGAGACAACTTCAGAAAACCCAACCACCTCAAACCCACTTACCTCGTGCATTATCTGCAGTCTTCCTACGTCTTCATTCATAACGTCACGCCCAAACACAGGCCTTTCCTCTACCAGGCTCTGGTTCTGGCCACTAGACATGTGTCTATCAAAGAGTGCCATCTGAGTTCTAGAAGCCTCACTGCGATGAGAGACCTTCTCATGAAGCAGTATCAGCAGGTATTCCCAACCAATCAGGAGaggactttaaaagaaagaaatgcacCTCCTTCACATCCTAACATTGAAAGAGAACATGCTGAGAGTTCTGAAGGCAGACATCAGATGGCCTGTGAGGCATTTGGGTGTGGGGTGCTGCCAAAGCTGGAAACTGCTGTGTACAAGCTTGAAACAAGATACCGGGGCAACAGCAACAACACGCTTAATGATGGTGATGAACTTTTCAGAGGGGTGGTGAAGTTTTCCAGCAAGAACATCTTGGAGTCCCTCCGTCACTGTGTCTCTACAGGCATGGCTGAAGGTCCTGTAACTCCCCTGCTGTCCTCCATCACTCAGAAAGGAAGGAACTACTTTGTGATCACTGACAAAGTCTCAGGAGCCACTGCCAGCCAGACTCCTGCTCCCAAAGCTTAAAGCAGCAGATAACAAGGACTATGAGTtgattgtgagtgtgagtgtctgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtggttcctGTTCTATGGTTTAACCAGGTTCAGGTTATTTTACAAAcgttaaataaagtttttaattgGTTGTTCTCTGTACTTGTTTATGTTGATGTCAGAAAGCTGGTAGTTTTATATACGTTTTTCATGCAAAACGTTTCATGCAAGTGATACAATGCCACAACTTTTGTATTTACATTACACACTTTAGatccatttattaataaaattgtttatatTCAATCCCCTAA

Function

symbol description
cenpn Predicted to act upstream of or within chromosome segregation and kinetochore assembly. Is expressed in myotome and somite. Orthologous to human CENPN (centromere protein N).

NR:

description
centromere protein N-like isoform X1

GO:

id name namespace
GO:0034508 centromere complex assembly biological_process
GO:0007059 chromosome segregation biological_process
GO:0000775 chromosome, centromeric region cellular_component

KEGG:

id description
K11506 CENPN; centromere protein N

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244011.2 True 1580 mRNA 0.45 10 5612961 5619291

Neighbor

gene id symbol gene type direction distance location
cdyl2 cdyl2 coding upstream 15173 5536734 ~ 5597788 (+)
LOC103036856 LOC103036856 coding upstream 88918 5521686 ~ 5524043 (+)
LOC103030327 maf,LOC108428434,LOC107728098,LOC107381304,LOC108274756 coding upstream 692090 4916228 ~ 4920871 (+)
LOC103037478 LOC108434021 coding upstream 874556 4678203 ~ 4738405 (+)
LOC103029469 spon1,spon1a,LOC107741890 coding upstream 1102421 4296319 ~ 4510540 (+)
atmin atmin coding downstream 1929 5621220 ~ 5630190 (+)
LOC103034771 LOC108442590 coding downstream 19957 5639248 ~ 5641113 (+)
gse1 gse1,LOC107565336,LOC107719882,LOC107661366 coding downstream 83805 5703096 ~ 6042503 (+)
LOC103031281 cox4i1,LOC103031281,LOC108412231,LOC107663352,LOC107731261,LOC107565335,LOC107572641 coding downstream 443961 6063252 ~ 6065533 (+)
LOC103030962 ds22a,LOC108434600,LOC105892932,LOC106562285 coding downstream 447924 6067215 ~ 6095668 (+)
G156225 NA non-coding upstream 1688 5602332 ~ 5611273 (+)
G156215 NA non-coding upstream 11302 5601105 ~ 5601659 (+)
G156209 NA non-coding upstream 127916 5484764 ~ 5485045 (+)
G156204 NA non-coding upstream 170962 5441738 ~ 5441999 (+)
G156202 NA non-coding upstream 285990 5326762 ~ 5326971 (+)
G156233 NA non-coding downstream 26590 5645881 ~ 5648574 (+)
G156331 NA non-coding downstream 431189 6050480 ~ 6052382 (+)
G156326 emc8,LOC106587369 non-coding downstream 437378 6056669 ~ 6061997 (+)
G156340 NA non-coding downstream 497854 6117145 ~ 6117589 (+)
G156395 NA non-coding downstream 687434 6306725 ~ 6307420 (+)
G156188 NA other upstream 455561 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 975671 4575668 ~ 4637290 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other upstream 1680798 3929331 ~ 3932163 (+)
LOC111194753 NA other upstream 1998470 3611018 ~ 3614491 (+)
G155776 NA other upstream 2857849 2738361 ~ 2755112 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other downstream 1474216 7093507 ~ 7171625 (+)
LOC111194759 NA other downstream 1753085 7372376 ~ 7431568 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other downstream 1981276 7600567 ~ 7606668 (+)
G157055 NA other downstream 2950639 8569930 ~ 8570877 (+)
G157383 NA other downstream 4321538 9940829 ~ 9941805 (+)

Expression


Co-expression Network