cdyl2 (cdyl2)


Basic Information

Item Value
gene id cdyl2
gene name cdyl2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 5536734 ~ 5597788 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244014.3
AACGTTCTTGTCAGGAACACAAGTCTGTTTTTTTGCGTTTAAGGTGTCGAGAAGAGCCTAAACATCACCTCTAACCTCTAAAGTGGAAGAAAGTGGAAGAAGAAAACACCTCAGCACAATTGCTGTGGACGTCAAGCCAATGACCGTCTTTACGCCGTGGGGGCGTCTATTAGCGGGAGGACTTCCTCCACGGTGAGGCTGATGAGCAGGAGCTGCTGGGGTGGAGAGAAGAGCGGCTCTCCGGTAGATAAACAGCACCGCCCCGTCCGTCCTCCCCTGTCCGCCAGCCGCCTGCGTgcgtgtttgttttttaaccaGAGGCTCAATCCATCGCAGCCGCGCTCGATTGACGCTGCCTGCTTGATCTGCTACTGCGGCTGGCTCTCAGTAACGAGGCCAGTTGGCTGGTTAATACCCGTCCACCGGGGCTTTCCTCCGGTACACCGAGCGAGCCAGCGAGGAGAACCGCGAACAGACCCAGCGCCCAGCCCCAAGGATGGCTTCGGGGGAGCTTTACGAGGTAGAGCGCATCGTGGACAAGCGGAAGAACAAGAAGGGCAAATGGGAGTACCTGATCCGATGGAAAGGCTACGGGAGTAAAGAGGACACCTGGGAGCCGGAGCACCACCTGCTGCACTGTGAGGAGTTCATAGATCAGTTCAACAACCTCCGTCTACAAGAGCGCCGTTCAAAACCAGCCAAGTCCAGCGGTGCAGTCTCACGCAACCACAGCCACCACGGCATCCACGACTCCTCCAGATCACGCGGGGAGGCTcgcaaaaagaaaagaactagtgggtcaggaggaggaggaggtggaggaccAGGTTTGGTAGCTCCACACAAACCAAGGAAGGCAACTGGAGGTGCTAAACCATCTGCAGACAGAACAACCAAACCCATGACTTATAAAAGCATGTCTTCAGGGCTACAGTTTGTCCCACCCATCAGAGGAACGGCTAATGGGCTACAAAATGGAGATATGGACCCACTTCATTACAGGACTACTGCCAGAACCCAGACTGTACCTAGCAGCAGGGTTGAGAGGATGATGGGGGATATGGACTTCACTGCAACTGCACCACCTCTTATGAATGAATTAGGTTCACTGCTCCCCAATGGAGAAGCTCATTTGCACAGTTCAGCCAAACGGAAGCTGGCCGAGGACAAAGGCTACGTTTTCGACAAGAGACTGAGGTACAACGTCCGGCAGAACGAAACCAACTACAGATTTCGGGACATCGTGGTCAGGAAGGAAGAGGGCTTCACACACGTTCTGCTGTCGAGCCAAACATCAGACAACAATGCACTAACCCCAGAGATCATGAAGGAGATGTGCCGTGCCCTGGGGAACGCAGCGGTGGATGACAGCAAGCTGCTGCTTCTCAGCGCGGTGGGCAGCATCTTCTGCAGCGGCCTGGACCCCTCGTACCTGATTGGACGGCTCTCCACAGACCGCAGGAAAGAGAGCAGCAGGATTGCAGATGCTGTGAGAGACTTTGTGAAGGCCTTCATCCACTTTAAGAAGCCCATCGTGGTGGCTATCAACGGACCTGCTCTGGGCCTCGGGGCCTCCATCCTGCCCCTGTGTGACATTGTATGGGCCAGTGAGAGAGCCTGGTTCCAGACACCATGTGCTGCTCTCCGCCTTACACCCTCCGGCTGCTCCTCGTACACCTTCCCCCAGATACTCGGAGTGGCTCTGGCCAATGAGATGCTGTTCTGTGGAAGGAAACTGACCGCGCAGGAGGCGTGTAGCCGTGGGTTGGTCTCTCAAGTGTTCTGGCCAACCACCTTCAACCAGGAGGTGATGTTACGAGTGAAGGAGATGGCTGCCTGCAGTGCTGTGGTTCTGGAAGAGTCCAAATGCATGGTGCGCAGCATCCTGAAGTCTGTCCTGGAGGAGGTGAATGAGAAGGAATGCCAGATGCTGAAACAGCTGTGGTGCTCCACCAAAGGACTGGAAGCTTTGTTCAGCTACCTTCAGAATAAGGGATACGATCCCTAACTTCCAGCCCTCCAGTCTTCTGAAGCGTCCTAGGCCATCAGTTGTTCAGTCAGAAGCGTGTCCGCACGGCCTGAGACATTCAGCAGCCTCGGCATCAAGCTTCACCCCCTTCAATGGAACCAAGATCAATCAGCATGTTTGGGCACCTCCACCTACACTCGTAAAAATAGAAGTGCTACAAAAGCTTCTTTGAGTGATGcagtagaataaaataaaaaataatcaatattaatttattaatcttattaataaataattaacataatttataaattatgatAAAGTGCTGTTAACCTTCCCCACTTTGTGTTTTGAGTTATTCTCTTAAAAAAACTCCCTATATATGTGTAGTTCTGTGGCTTAACCTTGTCCAGTTTACGACATGGAAGCAACATGGCAGAGAACTCAAACACAGAACCAACTGAGCAACTCAAGCAACTCATATTAAAGACAAATGCTGTGTTCTTCgtaccttaaaataataatatattaatggttatctaggttaaatgtgAAAATTAATCAGGATTCCAATTtaaagtcatatttatgcaaGCGTAATTGGTTGTTCTATAGTGGTTATTCTCAGTCCTGGACCTGGAGAACCACTGCCAGGTTTTAGAGTTTCCCGTAACTCTAACAGGGTATTTTCAGCCTGGACTAGTGCAATTagcatgcagcagcagcattagttaATAGCTGTAGTATTAATCAGAgctaataaatcagattaaactgcacctgaacagctgcaTAGCTCAAACATGAAGAGTACTTTTTATCGTTGGGTCGGATTGAGATCGAATCACCAAGATCACCTACTCTTGTGGGCTCAGGACTCAGTGGATTGTTTAGACCCTCAAGTGTGATCACTGTGTTAACACCAGCCAAAATGAACCATACCATGGGTTCAaatgaaccagagtctgttttagtCAGACTAAAAAGTGCAGGTGTCATAACTTCCTCAGGCACATCTAATCGAACTAATTAACCAACTGACCAGCACTTTTGAGGTAAACTGGGTGCGTTACATCTGAAAACTACAGTGGGTGATTACTACTGTTCTGTAGCATCACTCAGAGAACCTTTaatagcacctttatttttttcaggagtGTAGAGCAGATATTGATGTCATATCCTTTGAATGAAATTAAACCAAGCCAAgaatacaatatttattatctatatGTTTTCTATTACTACTGATCCCTGTTCTCAGAGGCGTGAAGTTCTGTGGTGATGCTCACCAGCATTCTATACACTGAAAATAATGATcctgtaaaaataatgaaatgcctttaatgttttcattctttatttattttcgaAGTCAAGCCATTATTTTGAAGAAAAATGGaacaaataattgaatatgattCTATATATAAcgttgtgtgtgtacagtgtagatagattatttgttttttttttctttttgttggtttttgattgtgttggtttgtgtttggtataattattattgatttgaGTTTGCTCTCATCTCTGAAGGGGTGATTTTCATACCAAAggtaatgttgttgttgttgttattattattattaatactgatcattcttttttatttttaacacattcCTGTCATATACCATTGTCCAGTGTCCATTATCCATGTGATATAGGGCATGGCATCAGTtgagtgcaatagtgatgggtttgcatattatttgcatattatTGAGGCCTATCGAGGTATTGAGGTTGCTTTAAACTGTGCTCTTTCTACAAATAACCATATATCTATGATTTCTCACTTTGTTTTTTAGAAggacatgtttttttatgaaaaaaaaaaaactaaaatatgctttatttaaactttacTTCTTTACCTAGTAAAGAAAATAGCAGATTTCTcccaaaaaagagaaatgatCGACAtatggttatttttttaaaagggctCAGTTGACATTGATAGATGTTCCAGATGACTGCAGCATCTTCCAACACCTTTACTGTCTTCAACACTGAATTATTTAAGAGTTTATGAAGAACTGACATCTCAGTGTCTCATACATTACTCGTGTATGATTCATGAGTCTATGCAAATCCAATACGAGGacgttttcttttgtttgttcttttgcTGTTTATCTGACAGTATCCACAGCAATGCATCAGTAACTGAAGGTAATCTCAGTTGAACATGAAGTGACGTTAGAGTGAAGTGGCGTTATCGACCACGAATGAGAAACTAATGAGAAAAtgactgcttttaaacatgtGTGCTGCTTTGTAGTCTTTCCTCTTCTAAAGTACTTCTCAAGCCTGGTCCTGGAGGAAGTTCAGACTGCTGATTGTAGTGTTTACCCTGTTCTCAGTACAGCTAATCCAGCTAATGAATGATTTTAATGATTCATCTTTTTATTAAGAGTCTCTGCTGATTTGAAGGTGCTGTGTTTGAGCAggaaaacactaaggctttgttctgactgctgtgtttttgttttataacagaTGAGACACCATAGGTAACAGAGGTATACATATTATGTATGGCAATCTGTGGCACAATTGCCCAGAGATGCACACCCGGAGATTGCCGAAGCTGGCAATGAATCTGGCAACCAAGCAGGCTGAGGAAGTGTTTCACTTTCTGGGACATTTCTGGGAAATTCTtattgtgtgtgggtgagcattatcctgctgagtTATTAAGTTGTTAGTGTCTTTggtatcactactaggagtaACTGATGTATGAGTTGTGTCTCAGTTTGGTCATTCTGGACGCTCAAATTAGATTTCAACATGTCTCTTACAATAATTTTGATCCAAATGTTTGTTGTGATCCAATTTGTAACATTCAGATTTTTCTGGATCTGGATACATTctagatatacagtacaggccaaaagtttgaacacaccttctctttttcaatgcgttttctttattttcatgactat

Function

symbol description
cdyl2 Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to be active in nucleus.

NR:

description
chromodomain Y-like protein 2

GO: NA

KEGG:

id description
K00653 CDY; chromodomain protein Y

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244014.3 True 4944 mRNA 0.44 7 5536734 5597788

Neighbor

gene id symbol gene type direction distance location
LOC103036856 LOC103036856 coding upstream 12691 5521686 ~ 5524043 (+)
LOC103030327 maf,LOC108428434,LOC107728098,LOC107381304,LOC108274756 coding upstream 615863 4916228 ~ 4920871 (+)
LOC103037478 LOC108434021 coding upstream 798329 4678203 ~ 4738405 (+)
LOC103029469 spon1,spon1a,LOC107741890 coding upstream 1026194 4296319 ~ 4510540 (+)
LOC103036857 LOC108433503,LOC108264854 coding upstream 1413254 4008326 ~ 4123480 (+)
cenpn cenpn coding downstream 15173 5612961 ~ 5619291 (+)
atmin atmin coding downstream 23432 5621220 ~ 5630190 (+)
LOC103034771 LOC108442590 coding downstream 41460 5639248 ~ 5641113 (+)
gse1 gse1,LOC107565336,LOC107719882,LOC107661366 coding downstream 105308 5703096 ~ 6042503 (+)
LOC103031281 cox4i1,LOC103031281,LOC108412231,LOC107663352,LOC107731261,LOC107565335,LOC107572641 coding downstream 465464 6063252 ~ 6065533 (+)
G156209 NA non-coding upstream 51689 5484764 ~ 5485045 (+)
G156204 NA non-coding upstream 94735 5441738 ~ 5441999 (+)
G156202 NA non-coding upstream 209763 5326762 ~ 5326971 (+)
G156190 NA non-coding upstream 325300 5210955 ~ 5211434 (+)
G156189 NA non-coding upstream 353434 5182534 ~ 5183300 (+)
G156215 NA non-coding downstream 3317 5601105 ~ 5601659 (+)
G156225 NA non-coding downstream 4544 5602332 ~ 5611273 (+)
G156233 NA non-coding downstream 48093 5645881 ~ 5648574 (+)
G156331 NA non-coding downstream 452692 6050480 ~ 6052382 (+)
G156326 emc8,LOC106587369 non-coding downstream 458881 6056669 ~ 6061997 (+)
G156188 NA other upstream 379334 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 899444 4575668 ~ 4637290 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other upstream 1604571 3929331 ~ 3932163 (+)
LOC111194753 NA other upstream 1922243 3611018 ~ 3614491 (+)
G155776 NA other upstream 2781622 2738361 ~ 2755112 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other downstream 1495719 7093507 ~ 7171625 (+)
LOC111194759 NA other downstream 1774588 7372376 ~ 7431568 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other downstream 2002779 7600567 ~ 7606668 (+)
G157055 NA other downstream 2972142 8569930 ~ 8570877 (+)
G157383 NA other downstream 4343041 9940829 ~ 9941805 (+)

Expression


Co-expression Network