foxf1 (foxf1)


Basic Information

Item Value
gene id foxf1
gene name foxf1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 6301848 ~ 6305572 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244016.3
agaagagaggagaagataGACGAGAGGAGAAGAGTAGGAGCTCTTAGCAGCCTCCCCCaacgtgttttttttctacttccAACCCCCACCTCTACTACTTGCACCACCACCTtcaaattttcatttcattgtGGACTGTGCTATCTGAGGAACAACCCAGAGGAGAaataagaagtttttttttccaactttgaCGTTTCTTTCCATACTTTTGGTTGCGCATCTGAAGCAAAGAAGTCATGGTCCAGAGTTGGTTGTGAGGGAGTTAACTGTGTTCGTGTTGTTTTTTGTACGCTACCCGAGAAGCAGATCCACCGCGGGGGAGTTCCCTTCCTGGCAAGCTCCTAAATGACGGCCGAGATCCAGCAGCCATCCGTGCAGACTCCTGCCCAGAGCAGCCCAATGTCTGCGCCAGAGAAGCCGGCAGCGATGGACGCGGCCTCCTCTGCCACCAAGACCAAGAAAACTAACGCCGGCATCAGGCGTCCCGAAAAACCGCCGTACTCCTATATCGCTCTCATCGTCATGGCCATTCAAAGTTCTCCCACCAAGCGCCTCACCCTCAGTGAGATCTACCAGTTCCTCCAGAGCCGCTTCCCCTTCTTCCGCGGCTCCTACCAAGGTTGGAAGAACTCTGTGCGCCACAACCTGTCCCTCAACGAGTGCTTCATCAAGCTCCCCAAAGGCTTGGGTCGCCCAGGCAAGGGTCACTACTGGACCATTGACCCGGCCAGCGAGTTCATGTTCGAGGAGGGTTCGTTCCGGCGCAGGCCGCGCGGATTCAGGCGCAAGTGCCAGGCGCTCAAGCCTTCCATGTACAGCATGATGAACGGCCTGGGATTCAACCACCTCCCCGACTCCTACAACTTCCAAGGCGGCGGAGGGGCGCTGTCGTGCCCTCCCAACAGCTTGTCTTTGGAAAGTGGGATTGGGATGATGAACGGACACTTGACCGGCAACATGGACGGTATGGGCCTGGCTGGACACTCCATGTCCCATCTGTCAGCCAATGGAGGACACTCGTACATGGGCAGCTGCACGGGACCGTCCGCCGGTGACTACCCACACCACGACAATGCCGCATCTCCGCTGCTGCCCAGCGGACCAGGGGTCATGGAACCCCATCCCGTTTACTCGAGCCCCACGTCGGCGTGGGCGCCCACCCCGTCCGCCTCTCTCAACAATGGAGCGTCCTATATCAAGCAGCAGCCGCTCTCGCCCTGCAACCCTGGGACGAACCCCCTGCAGCCCAGTTTACCCACGCACTCCCTGGACCAGTCATATCTGCACCAGAACGGACACAGCACGAGTGATCTTCAAGGTATCCCCAGGTACCACTCGCAGTCTCCAAGCATGTGTGACAGGAAGGAGTTCGTCTTCTCCTTCAACGCCATGACTTCATCCAGCATGCACTCACCCGGCAGCGGTTCCTATTACCACCATCAGCAGGTCGCCTACCAGGACATCAAGCCTTGCGTGATGTGACAGGAGCACCAACAACAGCAGCGGTGGTAAGGGTCAGCGCCAGCCGGGGCACTGCTGCGGGAGAGCGGCTGCGGGAGTGGGGGGACTCGCTCGGTCGGGCCCTGCTGGAGCGCAAAGAGGCGAAGGACACAAAAAAGACCACGAGACACTCGGTACAAGAAGAACTCTATCAGGGACGGAGAAAGGGCGTGCGCAATGTGCCATGCGACCTGCACCATGCGTAATGCGCTCTGCATTATGTGCCGTGCATTATGCGCCCTAAAGCGCACAGGCCACACTATAGGCTACCGGACAGAACTCTCGCCCCGCTCGGTACTCGCTCTGCTGGCGGATCATTAACACATCACAGAgcgtatgtgagtgtgtgtgtgagtgtttgtgtgtgtgtgagactggctgcaaaaaacacacatttgcaGTGAAATTCAGGATGAGTTGTTCTTATCGGATCataagtcattattattattatatt

Function

symbol description
foxf1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within sprouting angiogenesis. Predicted to be active in nucleus. Is expressed in gut; head; swim bladder; and swim bladder bud. Human ortholog(s) of this gene implicated in persistent fetal circulation syndrome. Orthologous to human FOXF1 (forkhead box F1).

NR:

description
PREDICTED: forkhead box protein F1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09399 FOXF; forkhead box protein F

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244016.3 True 1960 mRNA 0.56 2 6301848 6305572

Neighbor

gene id symbol gene type direction distance location
irf8 irf8 coding upstream 190842 6100753 ~ 6111006 (+)
LOC103030962 ds22a,LOC108434600,LOC105892932,LOC106562285 coding upstream 206180 6067215 ~ 6095668 (+)
LOC103031281 cox4i1,LOC103031281,LOC108412231,LOC107663352,LOC107731261,LOC107565335,LOC107572641 coding upstream 236315 6063252 ~ 6065533 (+)
gse1 gse1,LOC107565336,LOC107719882,LOC107661366 coding upstream 259345 5703096 ~ 6042503 (+)
LOC103034771 LOC108442590 coding upstream 660735 5639248 ~ 5641113 (+)
dbndd1 dbndd1,dbnd1,LOC106562278 coding downstream 19249 6324821 ~ 6363149 (+)
gas8 gas8,LOC108276428 coding downstream 177247 6482819 ~ 6488287 (+)
LOC103042367 LOC108435537,LOC105906449,LOC101169526 coding downstream 425598 6731170 ~ 6759468 (+)
zdhhc7 zdhhc7,LOC108435925,LOC107705792,LOC107573093,LOC107736389,LOC107686620,LOC107662857,LOC107601043 coding downstream 503363 6808935 ~ 6817496 (+)
cog8 cog8,LOC107686577,LOC107573089 coding downstream 518057 6823629 ~ 6828644 (+)
G156340 NA non-coding upstream 184259 6117145 ~ 6117589 (+)
G156326 emc8,LOC106587369 non-coding upstream 239851 6056669 ~ 6061997 (+)
G156331 NA non-coding upstream 249466 6050480 ~ 6052382 (+)
G156233 NA non-coding upstream 653274 5645881 ~ 5648574 (+)
G156225 NA non-coding upstream 690575 5602332 ~ 5611273 (+)
G156395 NA non-coding downstream 1153 6306725 ~ 6307420 (+)
G156397 NA non-coding downstream 2661 6308233 ~ 6308561 (+)
G156399 NA non-coding downstream 3800 6309372 ~ 6309620 (+)
G156402 NA non-coding downstream 8380 6313952 ~ 6317024 (+)
G156419 LOC108434843,LOC108264624 non-coding downstream 77695 6383267 ~ 6384043 (+)
G156188 NA other upstream 1144448 5157154 ~ 5157400 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other upstream 1664558 4575668 ~ 4637290 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other upstream 2369685 3929331 ~ 3932163 (+)
LOC111194753 NA other upstream 2687357 3611018 ~ 3614491 (+)
G155776 NA other upstream 3546736 2738361 ~ 2755112 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other downstream 787935 7093507 ~ 7171625 (+)
LOC111194759 NA other downstream 1066804 7372376 ~ 7431568 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other downstream 1294995 7600567 ~ 7606668 (+)
G157055 NA other downstream 2264358 8569930 ~ 8570877 (+)
G157383 NA other downstream 3635257 9940829 ~ 9941805 (+)

Expression


Co-expression Network